Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0533 ATGTTGCTCTTCTCCAAGTTCAGGAAAGCATTGCAGATCCCCTGCGGATTCCGGCGACACCTCCGAAGACTCTGTGTTCCGTCCGAGGAACGTGTCTCATCAAACCCGCAACTGAGTCTTCGTTTCTGCATGTGGGTGGCTCTCAAGTTCGAGAGCATTGAATCTCGAGATTACTATGACTTGGTGACTGATGTTCTTTGCGTTAACAACTGGCTTTCTCTTTACTGGGGGGCTCTTGAGTTGCTTAAGAAATCTGGGGTTTTGATAACTTCTGATTCTGTTAGATTTTTGATTAGGTCCTATAGGCGAATTGGTCTCCCCGAGAAGGCGATAGAGTCATTTGGAAGAATGAGTGAATTGGATTGTAAGCCCGATTCTCATGCCTATAACACCATTTTGGTTATTGCGTTGAAGAAAGAGTTGTTGTTGCTGGCTCTTGGGGTGTATAATTTGATGCTTAAGTCTAATTGTTGTCCCAATGAGTATACTTATAACCTGTTGATTGGTGGGTTTTGTAGAAGTGATGATGTTAAGGGTGCGCTTGAGATGGTTGATGAGATGGCCCAAAGGGATGTATTGCCGACTGTCTTTACGTATACCACTATTCTTTCTGGTCTGTGTAATGGGAAGAAGGTTGATGAGGCACAAAGGTTGTTTAATGGGATGATGCAAAACGGGTGCCAGCCTGATTTGATTTCTTATAATGTTTTAATTAATGGGTTTTGCAAGATGGGTAGGTTAGACGAAGCCATTTCGATGCTACGGTTGTTAGAGAGAGATGGGTATGCCCTTGGATTATCCAGCTATAGTTCTCTGATTGATGGCTTTTTTAGGGCTAGGAGATACAATGAAGCATATTCATGGTACACGAGGACGCTTAAGGAGGGGATTAAGCCAGATGTTGTTTTATACAGCATTATGATAAGGGGTATGTCGAATGAGGGGAGGGTGGGAGAAGCTGTCAAGATGTTAGATGAGATGAACGAGAAAGGCATAGATCCTGATGCTCATTGTTACAATGCAGTTATTAAAGGTCTCTGCGACATTAATCTTTTGGATCAAGCTCAATCTCTCCAACTTGAGATTTCTGAGCATAATCAGTTTCATAATGCTTGCACGCATACCATTCTTATCTGTGACATGTGTAAGAGCGGAATGGTTGGCGAGGCGAAGGAAATATTTAATCAGATGGAGAAGCTTGGATGTTTTCCTACAGTTGTGGCCTTCAATACCCTTATAAATGGACTGTGCAAGGCTGGCGAACTTAAGGAGGCACACCTTTTATTTTACAAGATGGAGATTGGGAGAAGTCCTTCGTTATTCTTCCGGCTTTCTCAGGGTTCTGATCGGGTTTCTGATAGTGCTGGTCTCCAGAAAAAAGTGGAACAAATGTGTGAGACTGGACAAATTTTGAATGCTTACAAGTTTCTTATACAACTTGCTGATAGTGGGGTTGTGCCTGATATAATGACTTACAACATTCTAATCAACGGATTTTGCAAGGTCTGTAACATTAATGGTGCTTTGAAGCTTTTCAAGGATATGCAACACAAGGGGCTATCACCCGACTGTGTTACTTATGGGACACTAATTGATGGGCTTTACAGAGTTGGCAGAGAAGAGGATGTCTTCAAGATTCACGAGCATATGTTAACACATGGGTGTGAACCTAGCTTGGCTGTTTATAGAGCACATATGACTTGGTTGTGTAGAAAAAGGAAAATCTCAAGGGCCTTCAGTCTTTATTTAGAATATTTGAAGAACTTTCGTGGCAGGGAAGTTGATTCAGTCAATGCTCTGAAGGAATGTTTTGTCAAAGGAGAAGTTGAACAAGCAATTCAAGGTTTACTAGAACTGGACTTCAGGTTTGGAGATTTGGATGTAGCTCCATATACAATTCTTCTTATTGGATTTTGTCAAGTAGAAAAAGTTGATGAAGCGTTAATTATATTTTCAATTCTTGATAAATTCAATATCACTGTCAGTTCTACAAGTTGTGTACATTTGATCAGCAGTCTCTGTGCAGAAAAGAGGCTGGAAGAAGCCATAGTTATCTTCCTTTACACTCTTGACAAAGGTTTTGGGTTGAAGCATAAAATTTGTTGCCGGCTCCTGAACTGTCTTCTTGACCAAAATAAAGTGGAGTATGCCATTGATCTTATTGGTAGGATGAAGTTTGTTGGATATGATTTAAATAGCATTGGTTATCGTAGAACAATGTCCCTTTTTCATCAAGTACAGACTGAAAAGGACAAGCAGTAA 2262 0.4085 MLLFSKFRKALQIPCGFRRHLRRLCVPSEERVSSNPQLSLRFCMWVALKFESIESRDYYDLVTDVLCVNNWLSLYWGALELLKKSGVLITSDSVRFLIRSYRRIGLPEKAIESFGRMSELDCKPDSHAYNTILVIALKKELLLLALGVYNLMLKSNCCPNEYTYNLLIGGFCRSDDVKGALEMVDEMAQRDVLPTVFTYTTILSGLCNGKKVDEAQRLFNGMMQNGCQPDLISYNVLINGFCKMGRLDEAISMLRLLERDGYALGLSSYSSLIDGFFRARRYNEAYSWYTRTLKEGIKPDVVLYSIMIRGMSNEGRVGEAVKMLDEMNEKGIDPDAHCYNAVIKGLCDINLLDQAQSLQLEISEHNQFHNACTHTILICDMCKSGMVGEAKEIFNQMEKLGCFPTVVAFNTLINGLCKAGELKEAHLLFYKMEIGRSPSLFFRLSQGSDRVSDSAGLQKKVEQMCETGQILNAYKFLIQLADSGVVPDIMTYNILINGFCKVCNINGALKLFKDMQHKGLSPDCVTYGTLIDGLYRVGREEDVFKIHEHMLTHGCEPSLAVYRAHMTWLCRKRKISRAFSLYLEYLKNFRGREVDSVNALKECFVKGEVEQAIQGLLELDFRFGDLDVAPYTILLIGFCQVEKVDEALIIFSILDKFNITVSSTSCVHLISSLCAEKRLEEAIVIFLYTLDKGFGLKHKICCRLLNCLLDQNKVEYAIDLIGRMKFVGYDLNSIGYRRTMSLFHQVQTEKDKQ* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0533 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 124 IPR002885 -
Apr1g0533 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Apr1g0533 753 Pfam PPR repeat 401 433 IPR002885 -
Apr1g0533 753 Pfam PPR repeat 370 398 IPR002885 -
Apr1g0533 753 Gene3D Tetratricopeptide repeat domain 593 753 IPR011990 GO:0005515
Apr1g0533 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Apr1g0533 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Apr1g0533 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Apr1g0533 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Apr1g0533 753 Pfam PPR repeat family 487 535 IPR002885 -
Apr1g0533 753 Pfam PPR repeat family 124 173 IPR002885 -
Apr1g0533 753 Pfam PPR repeat family 299 348 IPR002885 -
Apr1g0533 753 Pfam PPR repeat family 194 243 IPR002885 -
Apr1g0533 753 Pfam PPR repeat 631 654 IPR002885 -
Apr1g0533 753 Pfam PPR repeat 97 122 IPR002885 -
Apr1g0533 753 Pfam PPR repeat 268 297 IPR002885 -
Apr1g0533 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Apr1g0533 753 Gene3D Tetratricopeptide repeat domain 188 256 IPR011990 GO:0005515
Apr1g0533 753 Gene3D Tetratricopeptide repeat domain 363 434 IPR011990 GO:0005515
Apr1g0533 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Apr1g0533 753 SUPERFAMILY HCP-like 210 334 - -
Apr1g0533 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Apr1g0533 753 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 372 647 - -
Apr1g0533 753 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 192 432 - -
Apr1g0533 753 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 93 378 - -
Apr1g0533 753 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 461 741 - -
Apr1g0533 753 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Apr1g0533 753 TIGRFAM PPR: pentatricopeptide repeat domain 197 230 IPR002885 -
Apr1g0533 753 TIGRFAM PPR: pentatricopeptide repeat domain 525 558 IPR002885 -
Apr1g0533 753 TIGRFAM PPR: pentatricopeptide repeat domain 302 336 IPR002885 -
Apr1g0533 753 TIGRFAM PPR: pentatricopeptide repeat domain 268 301 IPR002885 -
Apr1g0533 753 TIGRFAM PPR: pentatricopeptide repeat domain 97 126 IPR002885 -
Apr1g0533 753 TIGRFAM PPR: pentatricopeptide repeat domain 162 195 IPR002885 -
Apr1g0533 753 TIGRFAM PPR: pentatricopeptide repeat domain 407 433 IPR002885 -
Apr1g0533 753 TIGRFAM PPR: pentatricopeptide repeat domain 491 524 IPR002885 -
Apr1g0533 753 TIGRFAM PPR: pentatricopeptide repeat domain 232 262 IPR002885 -
Apr1g0533 753 Gene3D Tetratricopeptide repeat domain 257 362 IPR011990 GO:0005515
Apr1g0533 753 Gene3D Tetratricopeptide repeat domain 436 588 IPR011990 GO:0005515
Apr1g0533 753 Gene3D Tetratricopeptide repeat domain 44 177 IPR011990 GO:0005515
Apr1g0533 753 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Apr1g0533 753 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 372 647 - -
Apr1g0533 753 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 192 432 - -
Apr1g0533 753 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 93 378 - -
Apr1g0533 753 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 461 741 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0533 316 695 Glycosyltransferase AT1G05670 24.672 2.85e-36 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0533 - - lang:109340115 1012.68