Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0521 ATGGGTGAAGATAGCCCGCGAGTTGGTGGGTTTTCAGCTGGTCTGGCTGTAATATTGAATGGTGAGGACAGTAAGAAAAATTTGCCAAAAACTCGGCTGCTTTCTTGCTGTGATGATTTAGGGCAACAGTCTGTGGAGCGAACCCTTGAATATGTGTTTGGCTTCCCCAACAGATCGCTCAATTCATTGACTGGTCCGGTTGACTGCAATTTTATTCGGTCTGTCATTCATAATGAATTCTCAAGATATAACATGAAATTGGGTGATTCTTATGGTGAAAAAGATGGGATTTGTATTAATAATAAAAATGGCAATGGGCCTGAAGTTGTAGGCCTAGAAGAATCCAGCATCTGTGGTGATATTAAAGTTATCAAGTCACCTTTTCTGATAGAGAGCTTGGCAATGTTCAGTAGTGCCAGGGCTAGTGCTTGTGTTTGGAAAGGAAAATGGATGTATGAAGTTATGCTAGAAACATCTGGCATACAGCAGCTTGGTTGGGCCACTCTTTCTTGCCCTTTCACTGACCACAAAGGTGTTGGTGATGCCGATGATTCTTATGCCTATGATGGGAGACGAGTTAGCAAGTGGAACAAGGATAATGAGACGTATGGTCAGTCATGGGTTGTTGGTGATATCATTGGATGTTGCATAGATTTAGATCAAGATGAAATTCTATTCTATAGGAATGGCAATTCACTTGGGGTGGCATTCCAAGGGATCCGAAAAATGGGTCCTGGTTTTGGTTATTATCCAGCAGTTTCTCTCTCTCGGGGTGAAAGATGTGAATTGAATTTCGGAGCCCGACCATTTAAGTATCCAATTGAAGGCTACCTTCCTCTTCAGGCTCCTCCATCTAAGAGCTACTTTGTCACCCAATTGCTGCAATGCTGGTCTAGGCTATTGGACATGCATTCAGTGGAACGAGCTGAGCATTCTTTAGTTCAGAAATTGAGAAGAGTGAATAGGTTTGTTTCACTGGAAGAAATTTTCCAACCTGTCTCCCATGCTATATGTGAGGAATTATTCTCTATACTTGAAGCAGATGTTGGGATCACAGAGTATATGGTTTGGGGTCCACTGTTGTCTTTCATTTATGAAGTTTTTGGTTTGCATGCACCCCATGATTACTCAAGCTTGGATAAAGTAGTAGAGGTTCTGCTACAATTTCAAGGATCACATGTGCTATTTGAGCACATCCTGTATGCCCTTTCCTGTGGTTGTAAAATAGCCTCATTAGCACTTACTGAATGTCCTTATTCTGGATCATATTCTCACCTTGCATTGGCATGTCATCTACTAAGACGAGAGGAACTCATGGTGCTTTGGTGGAGGTCACCAGATTTTGAATTCTTGTTCGAAGGTTTTCTGTCACAAAAGACACCAAACAAGCAGGATCTTGACTCCATGATACCAACTGTTTGGTGGCCTGGTTCATCTGAAGATGCATCTTATGAAGGTAACATGATGTTGACAACCACAGCTTTATCTGAATCAATCAGTAAGATTGAGGAGAAACATAGGGACCTCTGTCGCTTAGTGATACAATTTATACCACCTACGAATCCTCCCCAGTTACCTGGAGCAGTATTTAGGACATTTTTACGTAGTCTTCTACTGAAGAACAGAGGAGCAGAACGAAATGTGCCACCCCCTGGAGTTTCTAGCAATTCAGTTCTTGTTTCAATTTACACAGTTGTACTCCATTTTCTGTCGGAAGGATTTGCATTGGGTGACGTCTGTAGCTGGTTAAAGAGCTGCAAAGCTGATGTTGGTTTCCTTCATAGAGGTGGTGAACAGAGTTTTCCAGCACATTTGTTTCTTAAAAATGATCCCCATAGAACTGATATTTCCAGGCTTGGGGGATCCTATGGCCATTTATCAAAGCTACACCCTGCAATTGATCATGAAATGGAAGAGATTCGATGGGATGAAGGTTGCATGGATGGTGAAGAAACCAGAGTCACTCATTTGACCAGGCAGAAGCCATGCTGTTGTTCTAGTTATGATTCTGATTTTACAAGAAATTTCAAGGTTCCAGCTAAATACCTGGCCAAAGGTTCTCGTGGTCATTGTAGCTCTATTCCTGAAAGACCTGCTCATGTTGCTGCTGAGTGCAGCGATGGGAGTTTGAATGATGAGATAACAGATAAACCTAGCTCCAGTGATCAATCAGAACCTGAGTATGGTTACCGCCAAGTGCACCAGATGAATTCTGTACCAAAGGATACTAACATGTCTACAGCTACGCTACAAGAAGAAGAGCTGCTTGATGCTCTGCTGTGGTTGTATCATGTTGGTCTTGCTCCAAATTTTAAGCAGGCATCATACTACATGACTCATCAGGCACAGTCAATTTCCCTTCTGGAGGAAACTGATAAGCAAATAAGAGAACGAGCTTGCAGTGAGCAATTGAAGCATTTGAAAGAAGCTCGTAATGATTATAGAGAAGAGGTCATTGATTGTGTTAGGCATTGTGCTTGGTACCGCATCTCTCTATTTTCTCGATGGAAGCAGAGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAATTGCTTCTGGTTCTTAGCAATATGGATTTGGTGTTTATCTACATCCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTGTTGCGGAAAAGTGATCCTCCATTTGTTCCATCCACAATTTTCATCAAGCGAGGACTTGCTTCATTTGTCACCTTTGTAGTTACCCATTTCAACGATCCAAGAATATCAAGTGCAGATCTTAGGGATCTTCTTCTTCAGTCTATATCTGTCCTGGTGCAGTACAGGGAGTACTTGGCTGCTTTTGAGAGCAATGAGGCAGCCACCCAAAGAATGCCAAAAGCTTTATTATCCGCATTTGACAACAGATCTTGGATTCCAGTGACAAACATACTCCTTCGATTGTGCAAGGGTTCTGGTTTTAGTTTTTCAAAGAATGGGGAATCATCTTCATCATCAGTTCTTTTCCAAAGGTTGCTAAAAGAAGCTTGCATATATGAAGAAGTATTGTTTTCATCATTTCTAAACCGTCTGTTTAATACACTTAGCTGGACCATGACCGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAAAAGTACCAGGTAATAGAATTTCAGCAAAGAAAATGCTGTGTCATATTTGATCTCTCGTGTAATCTTGCAAGGATTCTAGAGTTCTGCACTCACGAGATTCCTCAAGCATTCCTGTCTGGACCAGACACAAACCTGCGGAGGTTAACTGAGTTGATTGTATTTATCTTAAATCACATTACTTCTGCAGCTGATGCTGAATTCTTTGACTTATCCCTTAGACGGCATGGCCAATCTTCAGAGAAAGTAAATCGAGGCATGATATTGGCACCTCTTGTAGGAATCATCTTAAATTTACTGGATGCTACTAATTTGGCAGAATATCAAGAAAACAATGATCTTTTAGATGTTTTTGCAAGCATGGACTGCCCAGATACCGTTCAGTATGGATTCCAGTATCTTCTGGATTATAACTGGGATGGATCTTTTCGGGGGGAAGCTTATGTGACAAAATACGAGCAGCTAGAGAACTTTCTGAGCCTTCTTACATGCCGCACTGTGTTACAACAAGATAAAATAGATAGCGTGGGAGACACAGATCTTGATGATAGCTTGTGCTGCATATGTTATGCATGTGAAGCAGATGCTCAGATTACACCTTGTTCACACAGATCTTGTTATGGCTGTATAACCAGACACCTTTTGAACTGCCAGAGATGTTTCTTTTGCAACGCAATAGTAACAGATGTTAGCAGAATTGGTGAGAAGACGAGCTAA 3822 0.4144 MGEDSPRVGGFSAGLAVILNGEDSKKNLPKTRLLSCCDDLGQQSVERTLEYVFGFPNRSLNSLTGPVDCNFIRSVIHNEFSRYNMKLGDSYGEKDGICINNKNGNGPEVVGLEESSICGDIKVIKSPFLIESLAMFSSARASACVWKGKWMYEVMLETSGIQQLGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKDNETYGQSWVVGDIIGCCIDLDQDEILFYRNGNSLGVAFQGIRKMGPGFGYYPAVSLSRGERCELNFGARPFKYPIEGYLPLQAPPSKSYFVTQLLQCWSRLLDMHSVERAEHSLVQKLRRVNRFVSLEEIFQPVSHAICEELFSILEADVGITEYMVWGPLLSFIYEVFGLHAPHDYSSLDKVVEVLLQFQGSHVLFEHILYALSCGCKIASLALTECPYSGSYSHLALACHLLRREELMVLWWRSPDFEFLFEGFLSQKTPNKQDLDSMIPTVWWPGSSEDASYEGNMMLTTTALSESISKIEEKHRDLCRLVIQFIPPTNPPQLPGAVFRTFLRSLLLKNRGAERNVPPPGVSSNSVLVSIYTVVLHFLSEGFALGDVCSWLKSCKADVGFLHRGGEQSFPAHLFLKNDPHRTDISRLGGSYGHLSKLHPAIDHEMEEIRWDEGCMDGEETRVTHLTRQKPCCCSSYDSDFTRNFKVPAKYLAKGSRGHCSSIPERPAHVAAECSDGSLNDEITDKPSSSDQSEPEYGYRQVHQMNSVPKDTNMSTATLQEEELLDALLWLYHVGLAPNFKQASYYMTHQAQSISLLEETDKQIRERACSEQLKHLKEARNDYREEVIDCVRHCAWYRISLFSRWKQRGMYAMCMWVVQLLLVLSNMDLVFIYIPEYYLEALVDCFHVLRKSDPPFVPSTIFIKRGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLAAFESNEAATQRMPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSVLFQRLLKEACIYEEVLFSSFLNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCCVIFDLSCNLARILEFCTHEIPQAFLSGPDTNLRRLTELIVFILNHITSAADAEFFDLSLRRHGQSSEKVNRGMILAPLVGIILNLLDATNLAEYQENNDLLDVFASMDCPDTVQYGFQYLLDYNWDGSFRGEAYVTKYEQLENFLSLLTCRTVLQQDKIDSVGDTDLDDSLCCICYACEADAQITPCSHRSCYGCITRHLLNCQRCFFCNAIVTDVSRIGEKTS* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0521 1273 Coils Coil 797 817 - -
Apr1g0521 1273 CDD SPRY_RNF123 138 266 IPR035773 -
Apr1g0521 1273 Gene3D - 121 297 IPR043136 -
Apr1g0521 1273 Pfam SPRY domain 149 267 IPR003877 GO:0005515
Apr1g0521 1273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 41 1272 - -
Apr1g0521 1273 SMART SPRY_3 147 269 IPR003877 GO:0005515
Apr1g0521 1273 ProSiteProfiles Zinc finger RING-type profile. 1221 1255 IPR001841 -
Apr1g0521 1273 SUPERFAMILY Concanavalin A-like lectins/glucanases 133 282 IPR013320 -
Apr1g0521 1273 MobiDBLite consensus disorder prediction 705 729 - -
Apr1g0521 1273 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 41 1272 IPR045129 GO:0004842
Apr1g0521 1273 SUPERFAMILY RING/U-box 1215 1264 - -
Apr1g0521 1273 ProSiteProfiles B30.2/SPRY domain profile. 77 270 IPR001870 -
Apr1g0521 1273 CDD RING-HC_RNF123 1219 1259 - -
Apr1g0521 1273 MobiDBLite consensus disorder prediction 712 729 - -
Apr1g0521 1273 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 138 IPR045737 -
Apr1g0521 1273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1214 1269 IPR013083 -
Apr1g0521 1273 Pfam Ubiquitin elongating factor core 726 958 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0521 K12169 - gmx:100800617 2430.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0521 1 6342048 6352763 Apr1g0521 1 6342048 6352763 ECH