Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0516 ATGTCCTCATCTTCAGAGGTCGAAACAGAAACGGCGACACTGATCCCATGCCTCCCAGACGACGTCGCTTTGAACTGTCTTGCAAGGATCCCTCGCTCCCATCATCCGACACTCTCCCTCGTTTCTAAACCCATCCGTTCCCTCCTCTATTCCCCACTATTCTTCAACACTCGCTCTCTCCTCCACTGCACCCAGAACCTCCTCTACCTCTCTCTCCGCTCACGCGCTTCCACTCTCCAATGGTTCACGCTTCACCACACGCTCCTCGCCCCTCTCCCTCCCATCCCCTCCCCCGCCATCGGCTCCGCCTATGCCGTCATCGGTCCCACCATCTACGTAATCGGCGGTTCCATTAACGACGTTCCCTCCCCCCATGTCTGGCTCCTTGATTGCCGCTTCCACCGCTGGCTCCCCGGCCCCGCCATGCGCGTCGGCCGTGAATTCGCCGCCGCCGGCGTCGTCGACGGCAAGATTTACGTCATCGGCGGCTGCGTGGCCGACACGTGGGCCCGGTCTGCGAACTGGGCGGAGGTGCTGGATCCCGCCGTGGGGCGGTGGGAGAGGGTGGCGAGCCCCGTGGAGGTGCGGGAGAAGTGGATGCACGCCAGCGCCGTCGTCGACGGCAAGGTTTACGCCATGGCAGACCGCGGCGGCATCGCGTTCGACCCTCGCAGCGGCGCGTGGGAGAGCGTGGGGGGAGAGTTGGATTACGGGTGGAGGGGGAGGGCGAGCGTGGTGGATGGGATTCTGTATTGCTATGATTATTTGGGGAAAATCAAAGGGTTCGATGTGAAATTAGGGTTGTGGAAGGAGTTGAAGGGGTTGGATAAGGGTTTGCCTAGGTTTTTGTGTGGTGCTACCATGGCTGATTTGGGTGGAAATTTGGTTGTGGTTTGGGAGTGCCAAGGGAGTGGGAGTGTGAAAGATATGGAGATTTGGTGTGCGGAGATTGAGGTGAAGAAGAATCCCGATGGGGAATTGTGGGGTCACGTTGCTTGGTTCAGTAAGGTTCTTTCTGTTCCTAAAGGCTCCTCCATTGTCCACTGTTCTTCTGTTGCCTTGTGA 1065 0.5887 MSSSSEVETETATLIPCLPDDVALNCLARIPRSHHPTLSLVSKPIRSLLYSPLFFNTRSLLHCTQNLLYLSLRSRASTLQWFTLHHTLLAPLPPIPSPAIGSAYAVIGPTIYVIGGSINDVPSPHVWLLDCRFHRWLPGPAMRVGREFAAAGVVDGKIYVIGGCVADTWARSANWAEVLDPAVGRWERVASPVEVREKWMHASAVVDGKVYAMADRGGIAFDPRSGAWESVGGELDYGWRGRASVVDGILYCYDYLGKIKGFDVKLGLWKELKGLDKGLPRFLCGATMADLGGNLVVVWECQGSGSVKDMEIWCAEIEVKKNPDGELWGHVAWFSKVLSVPKGSSIVHCSSVAL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0516 354 SUPERFAMILY Kelch motif 93 337 IPR015915 GO:0005515
Apr1g0516 354 SMART kelc_smart 110 156 IPR006652 GO:0005515
Apr1g0516 354 SMART kelc_smart 157 208 IPR006652 GO:0005515
Apr1g0516 354 SUPERFAMILY F-box domain 12 87 IPR036047 GO:0005515
Apr1g0516 354 Gene3D - 61 332 IPR015915 GO:0005515
Apr1g0516 354 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP6 2 338 - -
Apr1g0516 354 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 2 338 - -
Apr1g0516 354 Pfam Kelch motif 148 191 IPR006652 GO:0005515
Apr1g0516 354 Pfam Kelch motif 102 143 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0516 Apr-Chr1 6308856 6310509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0516 18 338 Miscellaneous Gene Families AT4G33900 35.714 8.26e-56 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0516 - - gmx:100798508 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0516 1 6308856 6310509 Apr1g0516 1 6308856 6310509 ECH