Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0511 ATGGCGACGGTGATGCAGAAAATCAAAGACATCGAAGATGAGATGGCAAGAACCCAAAAGAACAAGGCTACTGCTCATCATTTGGGCTTGCTGAAGGCTAAACTTGCAAAGCTGCGGAGGGAACTCCTTACACCTACATCAAAAGGAGGTGGAGGTGCTGGTGAAGGTTTTGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTTGGCAAATCTACTCTGCTGAATAAGTTGACTGGGACATTTTCAGAGGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACATATCGAGGAGCTAAAATTCAGTTGTTGGATCTCCCAGGAATTATTGAGGGTGCTAAGGATGGAAAGGGTAGAGGACGGCAGGTTATTAGTACTGCAAGGACATGCAATTGCATTTTAATTGTCCTGGATGCAATAAAGCCAATAACTCATAAGCGTCTTATAGAAAAAGAGCTAGAGGGATTTGGTATAAGGTTAAATAAAGAGCCACCAAATCTGACTTTTAGAAAGAAAGATAAGGGTGGAATTAATCTCACCTCAACTGTCACCACAACACTTCTGGATCTTGAGACTGTGAAGGCTATATGTAGTGAGTACAGAATTCACAATGCGGATATTACCCTCAGGTATGATGCCACTGCCGATGATCTTATAGATGTCATTGAGGGCAGTAGAGTCTATATGCCTTGCATCTATGTTGTGAACAAGATTGATCAGATCACACTAGAGGAACTGGAGATCTTGGATAAGCTACCTCATTACTGTCCAATCAGTGCACACCTGGAGTGGAACCTTGATGGTCTTCTAGAGAAAATTTGGGAGTATCTTAGCTTAACTCGGATTTATACTAAACCTAAAGGGATGAATCCTGACTATGAAGATCCTGTCATATTATCATCTAAGAGGAGGACAATTGAGGACTTCTGCAATCGCATTCACAAGGACATGGTTAAACAGTTTAAATATGCTCTGGTCTGGGGTTCAAGTGCGAAACACAAGCCTCAAAGAGTTGGCAAGATGTCATGTACTAAGTTGAATATGATATTACGCACCAGGAACATGAACTTGAAGATGAAGATGTGGTTCAGATTATCAAGAAAGTGTAATTTGTTGTAA 1155 0.4139 MATVMQKIKDIEDEMARTQKNKATAHHLGLLKAKLAKLRRELLTPTSKGGGGAGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRKKDKGGINLTSTVTTTLLDLETVKAICSEYRIHNADITLRYDATADDLIDVIEGSRVYMPCIYVVNKIDQITLEELEILDKLPHYCPISAHLEWNLDGLLEKIWEYLSLTRIYTKPKGMNPDYEDPVILSSKRRTIEDFCNRIHKDMVKQFKYALVWGSSAKHKPQRVGKMSCTKLNMILRTRNMNLKMKMWFRLSRKCNLL* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0511 384 CDD DRG 65 297 IPR045001 GO:0003924|GO:0005525
Apr1g0511 384 PANTHER - 1 353 IPR045001 GO:0003924|GO:0005525
Apr1g0511 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 324 IPR027417 -
Apr1g0511 384 Coils Coil 1 21 - -
Apr1g0511 384 TIGRFAM small_GTP: small GTP-binding protein domain 64 216 IPR005225 GO:0005525
Apr1g0511 384 ProSitePatterns GTP1/OBG family signature. 117 130 IPR006074 GO:0005525
Apr1g0511 384 Pfam C-terminal region of MMR_HSR1 domain 186 291 IPR031662 -
Apr1g0511 384 CDD TGS_DRG1 288 352 - -
Apr1g0511 384 Gene3D - 283 363 IPR012675 -
Apr1g0511 384 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 65 290 IPR031167 GO:0005525
Apr1g0511 384 Pfam 50S ribosome-binding GTPase 66 158 IPR006073 GO:0005525
Apr1g0511 384 Pfam TGS domain 293 352 IPR004095 -
Apr1g0511 384 Gene3D - 1 86 - -
Apr1g0511 384 Gene3D - 129 239 - -
Apr1g0511 384 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 1 1 353 - -
Apr1g0511 384 PRINTS GTP1/OBG GTP-binding protein family signature 67 87 IPR006073 GO:0005525
Apr1g0511 384 PRINTS GTP1/OBG GTP-binding protein family signature 88 106 IPR006073 GO:0005525
Apr1g0511 384 PRINTS GTP1/OBG GTP-binding protein family signature 115 130 IPR006073 GO:0005525
Apr1g0511 384 PRINTS GTP1/OBG GTP-binding protein family signature 132 150 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0511 Apr-Chr1 6274613 6282926 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0511 K06944 - gmx:100796064 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0511 1 6274613 6282926 Apr1g0511 1 6274613 6282926 ECH