Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0497 ATGGTTATGGAGAACACGGGGAATTTAGACGCGGCAATAGAGCAGTTGCTGAATGTGGAAAAGCATGCGAGGCTCGCCGGCGACGTCGCCGCCACCAGAAACGCCGTTACGGATATTTTACGACTATGCTTCGAAGCTCGTGCGTGGAGAACCCTCAATGACCAGATTGTTCTCTTGTCCAAACGACGTGGTCAGCTTAAGCAAGCTGTGACATCAATGGTCCAACAGGCTATGCAATATATTGATGAGACACCAGATCTTGAAACTCGTATAGAACTCATCAAAACCTTGAACAGTGTATCTGCAGGAAAGATATATGTTGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAGATTAAAGAAGAACAAGGGCTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGCGCCATGGCAAAAACTGAGAAAATTGCATTCATTCTTGAACAAGTTCGTTTGTGTCTAGACCGCCAAGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGTACAAGGGTATTTGATGCTGATGCTTCAAAGGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCCTGCAGATATACCATCTCTACCTGAGTTGAAGCGGATCTATTACGAACTAATGATTCGGTATTTTTCCCACAAAAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATTTATGAGATTCCATCTGTCAAAGAAAATTCCACCGAGTGGATTCCAATCCTTAGGAAAATATGTTGGTACTTGGTTCTATCACCACATGATCCAATGCAGTCAAGCCTTCTCAGTTCCACCTTGGAGGATAAGAATCTATCTGAGATTTCAAACTTTAAGTTATTGTTGAAACAGTTGGTCAATATTGAGGTTATCCAATGGACAACTCTTTGGGATACATACAAGGAAGAGTTCGAGAATGAGAAAAATTTTGGAAAATCTTTGGGTGAAAAGGCAGCAGAAGATCTGAGGGAGAGAGTAATTGAACATAATATTCTTGTTATATCAAAATACTATGCAAGGATTACTTTGAAGAGACTTGGAGAGCTTTTGTGTCTCAGTGTTCAGGAAGCTGAGAAACATCTTTCAGATATGGTTGTGTCCAAGGCATTGGTGGCGAAGATTGATAGACCCATGGGAATAGTCTGTTTCCAAACAGCCAAGGATAGCAATGACATTCTTAACTCATGGGCAGCAAATGTGGAGAGACTGCTTGATCTTGTCGAGAAGAGCTGTCATCAAATACACAAGGAAACTATGGTGCATAAAGCTGCGTTGAAGGTCTAA 1332 0.4092 MVMENTGNLDAAIEQLLNVEKHARLAGDVAATRNAVTDILRLCFEARAWRTLNDQIVLLSKRRGQLKQAVTSMVQQAMQYIDETPDLETRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISTRVFDADASKEKKKPKEGDNVVEEAPADIPSLPELKRIYYELMIRYFSHKNDYLEICRCYKAIYEIPSVKENSTEWIPILRKICWYLVLSPHDPMQSSLLSSTLEDKNLSEISNFKLLLKQLVNIEVIQWTTLWDTYKEEFENEKNFGKSLGEKAAEDLRERVIEHNILVISKYYARITLKRLGELLCLSVQEAEKHLSDMVVSKALVAKIDRPMGIVCFQTAKDSNDILNSWAANVERLLDLVEKSCHQIHKETMVHKAALKV* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0497 443 ProSiteProfiles PCI domain profile. 234 404 IPR000717 -
Apr1g0497 443 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 3 442 IPR040134 -
Apr1g0497 443 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 HOMOLOG A-LIKE 3 442 - -
Apr1g0497 443 SUPERFAMILY "Winged helix" DNA-binding domain 331 409 IPR036390 -
Apr1g0497 443 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 406 438 IPR040896 -
Apr1g0497 443 Pfam PCI domain 293 400 IPR000717 -
Apr1g0497 443 Gene3D - 329 408 IPR036388 -
Apr1g0497 443 SMART PINT_4 333 419 IPR000717 -
Apr1g0497 443 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 333 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0497 Apr-Chr1 6094933 6102920 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0497 K03035 - gmx:100793755 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0497 1 6094933 6102920 Apr1g0497 1 6094933 6102920 ECH