Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0492 ATGAACACGGGAGGTAGACTCGTTGCTGGTTCCCACAACAGGAATGAGTTCGTGCTCATCAATGCCGAAGAAAATGGAAGGGGTGATGATTTTGGCAAAATAAAGTCTGTCCAAGAATTGAGTGGACAGATATGTCAGATTTGTGGGGATGAGATAGAGATTACCGAGGATGGGGAGCCCTTTGTTGCATGCAATGAGTGTGCTTTCCCTGTTTGTCGGCCATGCTATGAGTATGAGAGACGGGAGGGGAATCAGGTTTGTCCACAGTGTAAGACCAGATACAAACGCATCAAAGGTAGTCCCAGGGTTGAAGGTGATGAAGATGAGGATGGTATTGATGACTTAGACAATGAGTTTGATTATGGATATCCTGATGCTTTGGGCCTGCAGTCAACTTCAGATTCAATGCTTTCTGGCCGTGGTTATAATTCTAACATATCTGGCATCCCCACAAATTTGGAACATGGCATGTCTCCTCTCAATTCGGAAATCCCACTGTTGACTTATGGAGAGGAGGATCCTGAGATATCATCTGATCAACATGCTCTAATTGTTCCCCCGTATATGAATAACGGAAACAGAGTACATCCCATGCCTTACACTGATTCGTCTATTCCATTACAACCTAGGCCAATGGTTCCAAAGAAAGATATTGCAGTGTATGGGTATGGAAGTGTGGCTTGGAAAGACCGAATGGAAGACTGGAAGAGAAGGCAGAATGACAAACTTCAGGTGGTGAAGCATGAAGGGAACAAAGATGGTGGAAATTTTGGCAATGAGTTGGAGGACCCTGATTTACCCATGATGGATGAAGGCAGGCAGCCACTTTCACGGAAGCTACCTATCCCTTCAAGCAAGATTAATCCATACAGGATGATTATAATACTCCGCCTTGTGATCCTTGGGCTTTTCTTTCATTATAGAATTCTCCACCCAGTTAATGATGCATATGGCTTGTGGTTGACATCTGTCATTTGTGAAATATGGTTCGCTGTATCATGGATAATGGATCAGTTTCCAAAATGGTACCCAATAGAGCGAGAAACATACCTTGATCGGCTTTCGCTGAGATATGAAAAAGAAGGGAAGCCATCTGAGTTGTCTAGTGTAGACGTCTTTGTCAGTACAGTCGATCCCATGAAAGAACCTCCGCTGATAACTACAAATACTGTTCTATCTATCCTTGCTGTTGATTATCCAGTTGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCTGCTATGCTAACTTTTGAGGCACTATCTGAGACATCTGAATTTGCTAGGAGATGGGTGCCATTTTGTAAAAAATACAATATTGAGCCCCGAGCTCCAGAATGGTATTTCAGTCAGAAGATGGATTATCTGAAAAATAAAGTACACCCAGCATTTGTCCGGGAAAGGAGAGCAATGAAGAGAGATTATGAAGAATTTAAGGTGAGGATAAACAGTTTGGTGGCAACTGCGCAAAAGGTTCCTGAGGATGGATGGACAATGCAGGATGGGACTCCATGGCCTGGAAATAATGTGAGGGATCATCCTGGGATGATTCAGGTCTTGCTTGGTCAGGATGGTGTTCGTGATATTGAAGGAAATGAGTTGCCTCACTTAGTCTATGTTTCTCGTGAAAAGCGGCCAGGCTTTGATCACCACAAAAAGGCTGGGGCTATGAATGCTCTGGTGCGGGTGTCTGCAATTATCTCAAATGCGCCTTATCTTCTCAATGTTGATTGTGATCACTACATTAACAATAGCAAGGCACTTAGGGAAGCTATGTGTTTCATGATGGACCCGCAAGTTGGAAAAAAAGTGTGCTATGTACAATTTCCTCAAAGATTTGATGGGATTGATCGCCATGATAGATACTCAAACAGGAATGTTGTATTTTTTGATATCAACATGAAAGGACTGGATGGTATACAAGGACCAATTTATGTTGGAACTGGATGTGTTTTCAGGAGGCAAGCACTTTATGGGTATGATGCACCTGCCAAGAAGAAGCCTCCGAGCAAAACCTGTAATTGTTGGCCAAAATGGTGCTGTTGCTTATGTTGTGGTTCTCGAAAGAAAAAAAATGCTAACACCAAGAAGGAGAAAAAGAAGGTGAAGCACAGGGAAGCATCAAAGCAGATACATGCACTTGAAAACATTGAGGGGATTGAGGGTTCCAATACGGAAAAGTCATCCACTTTGACTCAAATGAAGTTGGAGAAGAGGTTTGGGCAATCTCCCGTGTTTGTAGCCTCTGCTCTTCTGGAAGATGGTGGAATTCCACATGACGCGAGTCCTGCGTCACTTTTAAAAGAAGCCATCCAAGTCATCAGCTGTGGCTATGAAGACAAAACTGAATGGGGAAAAGAAGTTGGGTGGATATATGGTTCGGTGACAGAGGATATCTTGACAGGATTTAAAATGCATTGCCATGGTTGGCGGTCTGTGTATTGCATCCCTAAGCGGCCTGCATTTAAGGGGTCAGCACCGATCAATCTTTCAGATCGTTTGCACCAGGTTCTTCGGTGGGCCCTTGGATCTGTTGAGATATTTTTGAGTAAACATTGTCCAATCTGGTATGGCTATGGTAGCGGGTTGAAGTGGCTGGAACGATTTTCGTACATAAATTCAGTTGTATATCCTTGGACTTCCATCCCATTGCTTGTCTATTGTACACTACCAGCTATATGTCTTCTGACTGGGAAGTTTATTGTACCTGAGATTAGCAACTATGCAAGTCTTGTGTTCATGGCCCTCTTCATATCCATTGCAGCAACGGGTATCCTTGAGATGCAGTGGGGTGGTGTCGGTATAGACGATTGGTGGAGGAATGAACAGTTTTGGGTGATTGGAGGTGTGTCTGCACATCTTTTTGCCCTTTTTCAGGGTTTACTGAAGGTCTTGGCTGGTGTTGACACAAATTTCACTGTTACCTCGAAAGCAGCTGATGATGGAGAGTTCTCAGAGCTCTACATCTTCAAATGGACATCACTCTTAATTCCTCCAACTACTTTATTAATCATAAATATTGTTGGGGTTGTTGTTGGGGTCTCAGATGCCATCAATAATGGATATGATTCATGGGGCCCTCTCTTTGGTAGATTGTTCTTTGCCTTGTGGGTCATCATACATCTCTACCCATTCCTCAAAGGGTTACTTGGTAAACAAGATAGAATGCCCACCATTGTACTGGTTTGGTCAATCTTGCTAGCTTCCATATTGACTCTCATGTGGGTTCGAATTAACCCATTTGTGTCAAGAGATGGTCCTGTGTTGGAAATTTGTGGATTGAATTGTGATGATTCGTGA 3300 0.4321 MNTGGRLVAGSHNRNEFVLINAEENGRGDDFGKIKSVQELSGQICQICGDEIEITEDGEPFVACNECAFPVCRPCYEYERREGNQVCPQCKTRYKRIKGSPRVEGDEDEDGIDDLDNEFDYGYPDALGLQSTSDSMLSGRGYNSNISGIPTNLEHGMSPLNSEIPLLTYGEEDPEISSDQHALIVPPYMNNGNRVHPMPYTDSSIPLQPRPMVPKKDIAVYGYGSVAWKDRMEDWKRRQNDKLQVVKHEGNKDGGNFGNELEDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWIMDQFPKWYPIERETYLDRLSLRYEKEGKPSELSSVDVFVSTVDPMKEPPLITTNTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARRWVPFCKKYNIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKRDYEEFKVRINSLVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVLLGQDGVRDIEGNELPHLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYLLNVDCDHYINNSKALREAMCFMMDPQVGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKPPSKTCNCWPKWCCCLCCGSRKKKNANTKKEKKKVKHREASKQIHALENIEGIEGSNTEKSSTLTQMKLEKRFGQSPVFVASALLEDGGIPHDASPASLLKEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSKHCPIWYGYGSGLKWLERFSYINSVVYPWTSIPLLVYCTLPAICLLTGKFIVPEISNYASLVFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVDTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVVVGVSDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIVLVWSILLASILTLMWVRINPFVSRDGPVLEICGLNCDDS* 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0492 1099 Coils Coil 690 717 - -
Apr1g0492 1099 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 118 IPR013083 -
Apr1g0492 1099 MobiDBLite consensus disorder prediction 248 267 - -
Apr1g0492 1099 CDD mRING-HC-C4C4_CesA_plant 43 93 - -
Apr1g0492 1099 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 25 1096 - -
Apr1g0492 1099 SUPERFAMILY Nucleotide-diphospho-sugar transferases 384 915 IPR029044 -
Apr1g0492 1099 Pfam Cellulose synthase 370 1085 IPR005150 GO:0016020|GO:0016760|GO:0030244
Apr1g0492 1099 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 25 1096 - -
Apr1g0492 1099 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 513 665 IPR029044 -
Apr1g0492 1099 SUPERFAMILY RING/U-box 32 117 - -
Apr1g0492 1099 ProSiteProfiles Zinc finger RING-type profile. 45 91 IPR001841 -
Apr1g0492 1099 Pfam Zinc-binding RING-finger 35 111 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0492 Apr-Chr1 6016316 6024847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0492 1 1096 Glycosyltransferase AT5G64740 82.455 0.0 1857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0492 K10999 - gmx:100794515 2050.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1666 5 20258265 20261619 Apr1g0492 1 6016316 6024847 ECH
Apr1g0492 1 6016316 6024847 Apr1g0492 1 6016316 6024847 ECH
Apr2g0987 2 16146269 16153387 Apr1g0492 1 6016316 6024847 ECH