Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0462 ATGAATTCTCACATCGCAAATACCATGGATTTGCTTCAACTCCCAAAACCCTTCTTGCCTCCTAAAACCCCTTTCCCTCATTCTTTACCTTCTCGCTTTCTCACAACTACATTCCCTCGTCGCAACTTAACAAATCGATGGAAACTCAGAACCACTGCTTCGAATTCCGTTTCCGACACTGCAACGTCCAAACAAGAGCAAGAAGAAGAAGAAGACACCGAGTCCATTCAGCTATTCGAGAAACTGAAGGAGGCTGAAAGAAAACGGATAAGTGAGTTGGAAGAACTTGACAAGAAGGCAAACGTGCAGTTAGAGAGGCAGCTTGTCATGGCTTCTTCGTGGAGCAGAGCTTTGTTGACCCTGCGTGGAAAACTCAAGGGAACTGAATGGGATCCTGAAAATTCACACAAGATAGACTTCAGCGATTTTTTGAGACTTCTTGACTCTAACAATGTTCAGTTTATGGAGTACTCTAATTATGGTCAAACGATAGCAGTTATTCTACCATATTACAAAAATGGGAAACCGTTAGGAACTGAAGGGAATCCTAAGGATATTGTTTTTCGGCGTCATCCAGTCAATCGAATGCCAATTGATAGTTGGAATGATGTTTGGAGAAAGCTTCATCAACAAATTGTAAATGTTGATGTCATTAATGTTGATGCTGTACCCGCTGAAGTATACTCAAGTGTTGCAACTGCAGTCATATGGTCTATGCGTCTTGCCCTGGCTGTTGGATTTTATGTGTGGATTGATAATTTGATGAGACCAATATATGCAAAGTTGATACCTTGTGATTTGGGAACTCCTAGCCAACAAATTAAGCAGCCACTCAGAAGACATGCACTTGGTTCTCTAGGAAAGAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGGGTTACATTTGATGATTTTGCTGGCCAGGAATATATAAAGAGGGAACTACAAGAGATTGTTCAAATTTTAAAAAATGATGAGGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGTGTACTTCTTCATGGGCCTCCTGGAACTGGCAAAACTCTACTGGCTAAAGCCATTGCAGGTGAAGCAGGGTTGCCTTTTTTTGCAGCTAATGGCACAGATTTTGTAGAGATGTTTGTAGGAGTTGCTGCATCCCGTGTTAAAGATCTCTTTGCTAGTGCAAGATCATTTTCACCTTCTATAATATTTATTGACGAGATAGATGCTATTGGTAGCAAGCGAGGAGGACCTGATATTGGTGGAGGAGGTGCTGAAAGGGAACAAGGTTTACTTCAGATACTGACTGAGTTGGATGGATTCAAAGTTACCACAGCACAGGTGCTTGTGATAGGTGCTACAAATAGATTGGATATTCTTGATCCTGCCCTATTGAGGAAGGGTCGTTTTGACAAGATCATTAGAGTTGGTTTGCCGTCAAAAGATGGAAGACTTGCAATTTTGAAGGTGCATGCCAGGAATAAATTTTTTCGTTCAGAGGAGGAAAAGGAGACTCTACTTCAGGAAATTGCAGAACAGACAGAATATTTTACAGGGGCTGAGCTACAAAATATACTGAATGAAGCTGGAATTTTGACAGCCAGGAAGGATTTGGATTACATTGGACGAGATGAGCTGCTTGAGGCATTAAAAAGGCAAAAGGGAACATTTGAAACAGGGCAAGAGGATAGCACTGAAATTCCTGAAGAATTGAGACTGAGATTGGCATACAGAGAAGCAGCTGTTGCTGTTCTTGCATGTTATTTTCCTGAGCCCCACCGTCCTTTTGTCGAGACTGATATAAATTCTATCCGCAGCCACCCAAATATGCGTTATGCTGAAATTTCTGGCCAGGTTTTTGCAAGGAAATCAGATTACATAAACTCTCTAGTGCGTGCTTGTGCTCCTAGAGTAATTGAGGAGGAGATGTTTGGGATTGAAAACTTGTGTTGGATCTCTGCAAAGGCAACATTAGAAGCTTCAAGGCGTGCAGAATTTTTAATCCTGCAAACAGGAATGACTGCTTTTGGGAAAGCATATTACAAAAACCAAAGTGATCTTGTGCCTAATCTTGCCATGAAGCTTGAAGCACTTCGAGATGAGTATATGCGTTATGCTACAGAGAAGTGTTCATCTGTACTAAAAGAATACCATTCAGCGGTTGAGACAATCACAGATATTTTGCTTGAAAAGGGGCAAATAAAAGCTGAGGAGATTTGGTACATTTATAAGAGTGCTCCTCGTATAACTCAGCCTCCTGTAAGTCCAGTTGATGAATATGGAGCGCTTATTTATGCGGGACGATGGGGAATCCATGGGATCAGTCTTCCTGGAAGGGTTACATTTGCACCGGGCAATGTTGGATTTTCAACCTTCGGTGCTCCTCGTCCTACAGAGACACAAATTGTTAGTGATGAAACTTGGAAACTAGTAGATGATATCTGGGATAAAAAGGTTCAAAACATTAGAGATGAAGCTTCAAGGGTGATTGAAGAAGAGAAGGAAAAGCCACAACTTTTGATGGCGAGTCATTTTCTTTGA 2535 0.4126 MNSHIANTMDLLQLPKPFLPPKTPFPHSLPSRFLTTTFPRRNLTNRWKLRTTASNSVSDTATSKQEQEEEEDTESIQLFEKLKEAERKRISELEELDKKANVQLERQLVMASSWSRALLTLRGKLKGTEWDPENSHKIDFSDFLRLLDSNNVQFMEYSNYGQTIAVILPYYKNGKPLGTEGNPKDIVFRRHPVNRMPIDSWNDVWRKLHQQIVNVDVINVDAVPAEVYSSVATAVIWSMRLALAVGFYVWIDNLMRPIYAKLIPCDLGTPSQQIKQPLRRHALGSLGKSRAKFISAEERTGVTFDDFAGQEYIKRELQEIVQILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASARSFSPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTELDGFKVTTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHARNKFFRSEEEKETLLQEIAEQTEYFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDSTEIPEELRLRLAYREAAVAVLACYFPEPHRPFVETDINSIRSHPNMRYAEISGQVFARKSDYINSLVRACAPRVIEEEMFGIENLCWISAKATLEASRRAEFLILQTGMTAFGKAYYKNQSDLVPNLAMKLEALRDEYMRYATEKCSSVLKEYHSAVETITDILLEKGQIKAEEIWYIYKSAPRITQPPVSPVDEYGALIYAGRWGIHGISLPGRVTFAPGNVGFSTFGAPRPTETQIVSDETWKLVDDIWDKKVQNIRDEASRVIEEEKEKPQLLMASHFL* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0462 844 Pfam AAA+ lid domain 505 545 IPR041569 -
Apr1g0462 844 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 38 813 - -
Apr1g0462 844 Gene3D - 477 560 - -
Apr1g0462 844 Gene3D Peptidase M41 561 745 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr1g0462 844 ProSitePatterns AAA-protein family signature. 446 464 IPR003960 GO:0005524|GO:0016887
Apr1g0462 844 PANTHER METALLOPROTEASE M41 FTSH 38 813 - -
Apr1g0462 844 Coils Coil 76 96 - -
Apr1g0462 844 CDD AAA 308 476 - -
Apr1g0462 844 Gene3D - 285 475 IPR027417 -
Apr1g0462 844 MobiDBLite consensus disorder prediction 49 74 - -
Apr1g0462 844 SMART AAA_5 337 478 IPR003593 -
Apr1g0462 844 Pfam ATPase family associated with various cellular activities (AAA) 341 475 IPR003959 GO:0005524|GO:0016887
Apr1g0462 844 SUPERFAMILY FtsH protease domain-like 566 748 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Apr1g0462 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 550 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0462 Apr-Chr1 5705822 5714076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0462 201 552 Miscellaneous Gene Families AT3G02450 40.000 1.97e-66 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0462 - - gmx:100804743 1496.49