Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0443 ATGAAGATTAAATTCCATTCTTCCTTATTCTTCATGTTCTTGATAGCCTTTACAAGCATAAAAGTAAGCTTAGCAGATTGTGATAATCTACAAGACACTTGCCCCACAGCTTCACCCGATAAACATGCCATATTCATCAATGGACTCCCTTGTGAAAACCCACTTAACAAAAGTGCCCATGATTTTAAGAGCATGGAATTAAGCAACGGTGGTACTAGAGACGCTTTTGGTTCATCAATGAAAATAGTTACTGCTTCCAAATTTACTGGTCTTAACACTCTTGGCATCTCAGTTGGTAGAATTGATATTGAAGTGGATGGACTCGTGAATCTCCACAATCACCCAAGAGCCACTGAGATGATCTTTGTTAGGGAAGGAGTGTTGGAAGCTGCTTTTCTTGACACCCAAAACCAGCTCTTCCAAAAGGCTCTCAAGGCTGGTGATGTGTTTGTGATCCCCAAGGGCTTGTTCCATTTCTTCCTAAATCGTGGCGTGCAAGTTGCAACTTTGTTCTCTGTGTTCAACAGCCAGAACCCTGGCCTCGGATCCCTCACTTCCTTTCCTTCTACAGTGGAATCAACTGAGAAACTGAAGAGGAAACTCATCTCCCTTTATGACTCTCAAGTTGATGGTGTTAATGACTTGACTTCGGCAGTGTTAGATATCATGTATAGTTAA 678 0.4174 MKIKFHSSLFFMFLIAFTSIKVSLADCDNLQDTCPTASPDKHAIFINGLPCENPLNKSAHDFKSMELSNGGTRDAFGSSMKIVTASKFTGLNTLGISVGRIDIEVDGLVNLHNHPRATEMIFVREGVLEAAFLDTQNQLFQKALKAGDVFVIPKGLFHFFLNRGVQVATLFSVFNSQNPGLGSLTSFPSTVESTEKLKRKLISLYDSQVDGVNDLTSAVLDIMYS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0443 225 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 211 - -
Apr1g0443 225 CDD cupin_OxOx 26 184 - -
Apr1g0443 225 ProSitePatterns Germin family signature. 107 120 IPR019780 GO:0030145
Apr1g0443 225 Gene3D Jelly Rolls 25 216 IPR014710 -
Apr1g0443 225 SUPERFAMILY RmlC-like cupins 26 181 IPR011051 -
Apr1g0443 225 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 12 211 - -
Apr1g0443 225 SMART Cupin_1_3 68 203 IPR006045 -
Apr1g0443 225 PRINTS Germin signature 112 132 IPR001929 GO:0030145
Apr1g0443 225 PRINTS Germin signature 142 162 IPR001929 GO:0030145
Apr1g0443 225 PRINTS Germin signature 175 190 IPR001929 GO:0030145
Apr1g0443 225 Pfam Cupin 77 182 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0443 Apr-Chr1 5474014 5474691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0443 9 180 Miscellaneous Gene Families AT3G05930 37.931 1.15e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0443 - - gmx:100809017 318.161