Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0442 ATGGAAATGGAAATACTAGTGCAACACGCATTTTCGTCAACCTTAGCGTCCGCGTATCACAACGCAACACCATATGAACCTCTCTCTTCTCTTCCTTCTCCATCGTCACCACCTTTTCCATCGTTAATCAAATCAAAATCCATCTTTCATATCGTTCATCATTATTATTATTATTATCATTCTCCTTCGCTTCAATGGAATCCGACAAAGCAACCTTCGTTGCCCTCGTCCAAGGAATCTGCACCAGACCCTCATGGCCTCTCTTGCTTCTCCTCTTCACTTTCCTCACCCTTCTCTCCCTTCAGCTTCCTTCCAGCTCCGTTTTCCCCGTTTGGTTCCTCTCCGCCTCGTTACCATCGCCACATCCGCCCACCTGCTCCGGTTTCTTCCGCGATGTTCCGCCGAGGAAGGTTGTCATGTCCATCGCGGACTTCGGCGGCGTCGGCGACGGCAAAACTTCCAATACGGCATCGTTTCGGAAGGCGATTCGGTACATGCAGCGTTTCCAGAATCGTGGACCCAAAAGAGTGGCCAATAATTGAACCTTTGCCATCTTATGGAAGAGGGAGAGAGAGATTAGGAGGAAGGCATATTAGCCTTATACATGGAAATGGCCTTAGCAATGTTGTCATTACAGGACAAAATGGAACAGTTGATGGTCAAGGAAAGATATGGTGGGAACTTTGGTGGAACAGAACGTTGGAGCACACAAGAGGGCATCTCCTTGAACTAATGAACTCGGATAATGTTCTCATTTCAAACCTCACCTTTAGAAATTCTCCATTTTGGACCATCCATCCTGTTTACTGCAGTAATGTTCTGATCAAAGGGATGACAATCTTGGCTCCTCTTAATGCGCCAAATACTGATGGCATAGACCCAGACTCAAGTACCAATGTATGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTAGCCATAAAGAGTGGTTGGGATCAATACGGAATCACCATGGCCCGTCCTAGCACAAATATCATAGTGAGGAGAGTATCAGGCACTACACCAACATGTTCTGGAGTTGGAATAGGTAGTGAGATGTCTGGTGGAATTTCAAATATAAAAATTGAGAATCTGCATGTCTGGGATTCTGCAGCTGGTGTTCGCATAAAATCTGATAAAGGCAGAGGAGGATACATAACCAATGTTAGTATAAGTGATATAAGAATGGAGAGAGTGAAGATACCCATTAGGTTCAGTAGAGGTTCAAACGACCATCCTGATGATGGGTGGGATCCACAAGCTGTTCCTAGATTCAAAGATATTTTATTCAGTAATGTGGTCAGTGTAAATTCAACAAAAGCCCCAGTTTTGGAAGGTATAGAGGGTTCATCATTTGAAGGCTTATGCTTCAAAAATATTACTCTACTTGGTGTGGCCTTATCTCCAACATGGCATTGCGAATATGTCTCTGGTTTTGCCACTGAGGTGTTGCCGGTTCCATGTCATGAATTGCAGAACAATACCGATTCATCCTGGTGTTCACGTTGA 1515 0.4436 MEMEILVQHAFSSTLASAYHNATPYEPLSSLPSPSSPPFPSLIKSKSIFHIVHHYYYYYHSPSLQWNPTKQPSLPSSKESAPDPHGLSCFSSSLSSPFSPFSFLPAPFSPFGSSPPRYHRHIRPPAPVSSAMFRRGRLSCPSRTSAASATAKLPIRHRFGRRFGTCSVSRIVDPKEWPIIEPLPSYGRGRERLGGRHISLIHGNGLSNVVITGQNGTVDGQGKIWWELWWNRTLEHTRGHLLELMNSDNVLISNLTFRNSPFWTIHPVYCSNVLIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGITMARPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNIKIENLHVWDSAAGVRIKSDKGRGGYITNVSISDIRMERVKIPIRFSRGSNDHPDDGWDPQAVPRFKDILFSNVVSVNSTKAPVLEGIEGSSFEGLCFKNITLLGVALSPTWHCEYVSGFATEVLPVPCHELQNNTDSSWCSR* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0442 504 PANTHER PECTIN LYASE-RELATED 172 503 - -
Apr1g0442 504 SUPERFAMILY Pectin lyase-like 199 494 IPR011050 -
Apr1g0442 504 SMART pbh1 331 353 IPR006626 -
Apr1g0442 504 SMART pbh1 270 296 IPR006626 -
Apr1g0442 504 SMART pbh1 359 380 IPR006626 -
Apr1g0442 504 SMART pbh1 247 269 IPR006626 -
Apr1g0442 504 SMART pbh1 297 329 IPR006626 -
Apr1g0442 504 Pfam Glycosyl hydrolases family 28 200 479 IPR000743 GO:0004650|GO:0005975
Apr1g0442 504 Gene3D - 165 468 IPR012334 -
Apr1g0442 504 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 172 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0442 Apr-Chr1 5469062 5472546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0442 173 503 Glycoside Hydrolase AT4G33440 71.687 2.32e-173 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0442 - - gmx:100814190 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0442 1 5469062 5472546 Apr1g0442 1 5469062 5472546 ECH