Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0440 ATGGATTCGAGTTCGAGCCAGGAATTTGATTATTCGTTTAAGTTGTTGCTGATTGGGGATTCCGGTGTTGGCAAGAGTAGTCTCCTCCTATGTTTTACCTCCAATGAATTTGAAGATCTTGCTCCCACAATTGGTGTTGATTTTAAGGTCAAGTATTTGATGATGGATGGTAAAAAGCTGAAGCTTGCTATTTGGGATACAGCTGGTCAGGAGAGATTCAGAACATTGACAAGTTCTTACTACCGAGGTGCACAAGGCATCATTATGGTTTATGATGTCACTCGGCGGGAAACATTTACGGATCTCTCTGAAGTATGGGCAAAGGAAATTGACCTTTATTCAACAAATCCGGAATGCATCAAAATGCTTGTCGGAAACAAAGTGGATAAGGACAGTGATAGAGCCGTGACAAAGAAAGAGGGAATAGACTTTGCCAGGGAATATGGTTGCCTATTTATTGAATGTAGTGCTAAAACTCGAGTTAACGTACAACAATGCTTTGAAGAGCTTGTTCTGAAGATTCTGGATACACCTAGCCTCTTAGCTGAGGGCTCTAAGGGCCTTAAAAAGAACATTTTCAAGGACAAGCCACCCAAGTCCGATGCCACAAGTAGTTGTTGCTGA 624 0.4183 MDSSSSQEFDYSFKLLLIGDSGVGKSSLLLCFTSNEFEDLAPTIGVDFKVKYLMMDGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTDLSEVWAKEIDLYSTNPECIKMLVGNKVDKDSDRAVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGLKKNIFKDKPPKSDATSSCC* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0440 207 ProSiteProfiles small GTPase Rho family profile. 6 175 - -
Apr1g0440 207 SMART rab_sub_5 13 177 - -
Apr1g0440 207 SMART ras_sub_4 10 177 - -
Apr1g0440 207 ProSiteProfiles small GTPase Ras family profile. 4 207 IPR001806 GO:0003924|GO:0005525
Apr1g0440 207 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Apr1g0440 207 PRINTS Transforming protein P21 ras signature 13 34 - -
Apr1g0440 207 PRINTS Transforming protein P21 ras signature 35 51 - -
Apr1g0440 207 PRINTS Transforming protein P21 ras signature 53 75 - -
Apr1g0440 207 PRINTS Transforming protein P21 ras signature 117 130 - -
Apr1g0440 207 PRINTS Transforming protein P21 ras signature 152 174 - -
Apr1g0440 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 180 IPR027417 -
Apr1g0440 207 PANTHER SMALL GTPASE FAMILY RAB PROTEIN 1 207 - -
Apr1g0440 207 Pfam Ras family 14 175 IPR001806 GO:0003924|GO:0005525
Apr1g0440 207 ProSiteProfiles small GTPase Rab1 family profile. 8 207 - -
Apr1g0440 207 CDD Rab18 13 174 - -
Apr1g0440 207 SMART rho_sub_3 15 177 IPR001806 GO:0003924|GO:0005525
Apr1g0440 207 Gene3D - 5 207 IPR027417 -
Apr1g0440 207 PANTHER DRAB5-RELATED 1 207 - -
Apr1g0440 207 SMART arf_sub_2 1 178 - -
Apr1g0440 207 SMART ran_sub_2 18 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0440 Apr-Chr1 5440908 5445673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0440 12 189 EF-hand Containing Proteins AT5G27540 26.882 2.43e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0440 K07910 K17506 gmx:100779729 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1028 2 16630747 16634526 Apr1g0440 1 5440908 5445673 PCT