Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0438 ATGAGGAAATGGAATTTCATCCTCTCCCATTTCAAATCAAAGACGAGCCTAACTGCAACCTCTTCGGCTTCTCGAACCAATCCAATTCGCCCCAATAATTTCAGTAACCTCATTCAAATTCATAATCCTATTGCGCCACTCTCCCTTCTCAATTCGTGCCGCTTTGCCTCCACAATCGCTCAAAATTCTTCCGCTTTGAATCCCGTTCAGGATTCCGATGACAAACAGGTCATTGATTTTCCTGGAGGAGCCATAACGTACATCCCTGAAATGAGGTTTATATCTGAATCAGCTAAGGAGAGAATACCCTGCTACCGTGTCCTTGATGAGAATGGACAACCAATTTTGGGTCATAACTTTGTGCAGATTAATAAGGAAGTTGCTGTTAAGATGTATACTGACATGGTTACTCTCCGAACTATGGACGCTATCTTCTATGAAGCCCAAAGGCAAGGTAGACTATCTTTTTATGTGACAACAATTGGAGAGGAGGCTATTAATGTTGCTTCAGCTGCAGCTCTTGCTATGGATGATGTTATTTTCCCTCAGTATAGGGAACCGGGAGTCCTGTTATGGCGTGGATTCACTCTGCAAGAATTTGCAAACCAGCTTTTTTCCAATAAATATGATAATGGGAAAGGAAGGCAGATGCCAGCTCATTATGGGTCCCACAAGCACAATTACTTTACTGTAGCATCAACTATTGCTACACAAATTTCCCATGCTGTTGGAGCTGCTTATTCCTTAAAGATGGATGAAAAGGATGCATGTGCTGTAACTTACTTCGGTGATGGTGGCTCAAGTGAGGGAGATTTCCATGCTGCTTTAAATTTTGCAGCGGTGATGGAGGCCCCGGTTATTTTTATATGCCGGAACAATGGATGGGCCATCAGCACCCCTATTTCAGATCAGTTTCGAAGTGATGGTGTTGCCGCAAAAGGACAGGCATATGGAGTCCGTACCATCCGTGTAGATGGCAATGATGCCCTGGCCATTTATAATGCTGTTCAAGCTGCTCGTCAAATGGCAGTTACTGAAGAGAGACCAGTTCTAATAGAAGCTCTTACATATAGAGTGGGACACCACAGCACATCGGATGACTCTACCAAATATCGTCCTGCAAATGAGATTGAATGGTGGAGAAAGGTGCGTGATCCTGTGGCTAGATTTAGAAAGTGGATGGAAAGAAACGGTTGGTGGAATGATACGGCTGAGTCAGAGCTTATGAACAGTTTGAGACAGCAGCTTCTGCATACAATTCAAGTCGCAGAGAGTGTAGAAAAACCTCCACTTGCAGATGTTTTTAGTGATGTTTATGATGTCCCTCCGTCTAATCTCTCTGAACAAGAGCAATGGCTGAAGGAGACGGTAAAAAGACATCCACAAGAGTACCCAACAAATATTTCTGTGTAG 1413 0.4352 MRKWNFILSHFKSKTSLTATSSASRTNPIRPNNFSNLIQIHNPIAPLSLLNSCRFASTIAQNSSALNPVQDSDDKQVIDFPGGAITYIPEMRFISESAKERIPCYRVLDENGQPILGHNFVQINKEVAVKMYTDMVTLRTMDAIFYEAQRQGRLSFYVTTIGEEAINVASAAALAMDDVIFPQYREPGVLLWRGFTLQEFANQLFSNKYDNGKGRQMPAHYGSHKHNYFTVASTIATQISHAVGAAYSLKMDEKDACAVTYFGDGGSSEGDFHAALNFAAVMEAPVIFICRNNGWAISTPISDQFRSDGVAAKGQAYGVRTIRVDGNDALAIYNAVQAARQMAVTEERPVLIEALTYRVGHHSTSDDSTKYRPANEIEWWRKVRDPVARFRKWMERNGWWNDTAESELMNSLRQQLLHTIQVAESVEKPPLADVFSDVYDVPPSNLSEQEQWLKETVKRHPQEYPTNISV* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0438 470 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 51 469 - -
Apr1g0438 470 CDD TPP_E1_PDC_ADC_BCADC 131 423 - -
Apr1g0438 470 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 51 469 - -
Apr1g0438 470 Pfam Dehydrogenase E1 component 134 429 IPR001017 GO:0016624
Apr1g0438 470 Gene3D - 72 469 - -
Apr1g0438 470 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 103 465 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0438 Apr-Chr1 5400621 5407669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0438 54 308 Acyl Lipid Metabolism Gene Families AT5G09300 73.930 2.10e-140 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0438 K00166 - gmx:100779198 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0438 1 5400621 5407669 Apr1g0438 1 5400621 5407669 ECH