Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0426 ATGAACGTTCTGAACGTGGCAGAGAAGCCTTCGGTGGCGAAGTCCGTCTCCACAATCCTATCAAGGAACCAAGGCCTTCGAATCAGAGACGGGCGTTCCCGCTACAACAAGATATTCGAGTTCAACTACACCATTCGCGGCCAACCTTGCCATATGCTCTTCACCTCCGTCACTGGCCACCTCATGGAACTCGAGTTCGAAGATCGTTATCGCAAGTGGCACTCTTGTGACCCCGCCGATCTCTACCACGCTCCTGTCCATAAATTTGTTCCGGAGGACAAGAAGGATATCAAGAGGACGCTGGAGGAGGAAGCTAGGAGGTGCCAGTGGCTTGTTTTGTGGCTCGATTGTGACAGAGAGGGTGAGAATATTGCGTTTGAAGTGGTTGACGTATGTACTGCGGCGAATCGTTACCTTACTATAAAGCGGGCTCGGTTTTCTGCATTGATTGACAGGGAAATCCATCAAGCTGTGCAGAATCTTGTTGAGCCTAATAAGTGGTTTTCCGATGCTGTGGATGCTAGGCAAGAAATAGATCTTCGTATTGGTGCTTCTTTCACCAGGTTCCAGACCATGTTAATGAGAGATGCTTTTATCATTGACACTGTTACAGATGACAGAAATATTGTCTTAAGTTATGGCCCTTGTCAGTTTCCTACACTTGGATTTGTCGTGGAAAGATATTGGGAGATACAAGCACATGAGCCAGAAGAGTTTTGGTCCATCAATTGTTCTCATAGATCAGATGAAGGCGTTGCCAATTTCAGCTGGATGCGGGGCCATCTATTTGATTATACTTGTGCAGTTATAATATATGAGATGTGCGTTGAGGAATCAACAGCAACTGTTACCAATGTTAGACAACAGGAGAAGCTGAAGTATCCCCCACATCCTCTAAATACAATTGAGCTTGAGAAACGTGCTTCACGATACTTCCGGATGAGTTCTGAGCACACAATGAAGGTGGCGGAAGAACTTTATCAAGCTGGGTTCATCAGTTATCCTCGTACAGAAACTGATAGCTTTTCTTCAAGGACTGATTTGCATACAATTGTGCAAGAACAACAAGGGCATCCTGAGTGGGGAATATATGCACAGCGGTTGTTGGACCCTGGGGTGGGACTTTGGAGAAACCCTAGGGGTGGTGGACATGATGACAAAGCCCATCCACCCATTCACCCCACAAAATTTTCTACAGGAGAATCTGGATGGAGCCAAGACCACCATAAACTGTATGGACTTGTAGTTCGCCACTTCCTAGCATGTGTCTCAAAGCCTGCTGTAGGAGCTGAAACCATCGTTGAAATTGATATTGCCGGTGAACTATTTTCTGTCTGCGGGAGGGTGATTCTAGAGAAAAACTATTTGGATGTTTATCACTTTGAATCTTGGGGTGGATCGATGATTCCTACATATACTGTTGGGCAACAGTTCGTTCCAACAACTTTGACCCTTGATTCAGGAGTAACCAGGCCACCACCACTTCTGAGTGAAGCTGATCTGCTGAGTTGTATGGACAAGGAGGGTATTGGTACAGATGCTACAATGCATGATCACATCAAGAAGCTGCTTGATCGATTTTATGCAACGAAGGATGCTAGCACTCGCTTCAGACCAACTAATCTTGGTGAGGCACTTGTTATGGGATATGATGACATGGGGTATAAACTTTGGAAACCATATCTTAGAGCTGTTATGGAACGTGACATGAAATCTGTCAGTGAAGGAAATAAAAGCAAAGCTGAAGTTCTGGCAACTAGCTTGCAGCAGATGAAAGCTTGTTTCCTAGATGCAAGATTGAATAAAGTAAAACTTTTAGAAGCCATGGCAATATTTTTCGAAAGATCTAGTAGAGCTGGAGGTGATGAGCTGCATGCAACTGGTGAAATTGTTAGGCGTTGTGGACTTTGCCAAGAATCAGACATGGTGCTAAAGAAAAATCGAGATGGCAATTTTATGGTTGGATGTTTGGGCTTCCCTCAGTGTAGGAATGCTGTCTGGCTTCCTGGATCAGTATCAGAAGCAGTTGTGACCACCAATGTTTGCAACTCTTGTACTCCTGGTCCTCTTTACTTGATTCAATTCAAGTTTAGGCAGCTGGAAGTACCACCAAACTATAGCGCCAACCATTTGGGTTGCATTGGTGGCTGTGACGAGATTCTTACGCAATTGACAGAAATATGCGGCACTGGCCCTCGAATGCCAGCAAGAGCTCGTGGACCAACTGCTGCAACTAGCAATGCTAATCATACTAACCCGAGGCAAGGAGTTTGTACAAACTGTCAAGAAATAGGGCATTCTTCTAATGATTGTCCTTTACGTTCCAGAAATACCCAACATCGTGGAATGAGCCAACAAAGTGGGGAAGCTTCTGTTTCATGCAGTTCGTGTGGAGCAATATGTGTTTTGCGCACTGCAAATACTGCAAATAACAGGGGAAGGAAGTTCTACTCATGTCAATCACAGGAGTGCAATTTCTTTGTATGGGAGGATAGCCTCAATGATGGCACTGGCGGAAGAAGTGCAACACGTTCAAATAGTATTCCAGCATCTAACCCTAGGCGAAATGGTGGTCGTGGAACTCGTGGTAGAGGTGGCCGAAATGGATCTCATACTTCTAACATGACTTTTGTGTCAGCTACTGGGGACCCTATTTCTGGTAGAAGGTGCTTTGTGTGTGGTGACCCATCTCACTTTGCTAATGTTTGCCCCAACCGTGGAGTCTGA 2727 0.4525 MNVLNVAEKPSVAKSVSTILSRNQGLRIRDGRSRYNKIFEFNYTIRGQPCHMLFTSVTGHLMELEFEDRYRKWHSCDPADLYHAPVHKFVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTAANRYLTIKRARFSALIDREIHQAVQNLVEPNKWFSDAVDARQEIDLRIGASFTRFQTMLMRDAFIIDTVTDDRNIVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWSINCSHRSDEGVANFSWMRGHLFDYTCAVIIYEMCVEESTATVTNVRQQEKLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLHTIVQEQQGHPEWGIYAQRLLDPGVGLWRNPRGGGHDDKAHPPIHPTKFSTGESGWSQDHHKLYGLVVRHFLACVSKPAVGAETIVEIDIAGELFSVCGRVILEKNYLDVYHFESWGGSMIPTYTVGQQFVPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASTRFRPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKSVSEGNKSKAEVLATSLQQMKACFLDARLNKVKLLEAMAIFFERSSRAGGDELHATGEIVRRCGLCQESDMVLKKNRDGNFMVGCLGFPQCRNAVWLPGSVSEAVVTTNVCNSCTPGPLYLIQFKFRQLEVPPNYSANHLGCIGGCDEILTQLTEICGTGPRMPARARGPTAATSNANHTNPRQGVCTNCQEIGHSSNDCPLRSRNTQHRGMSQQSGEASVSCSSCGAICVLRTANTANNRGRKFYSCQSQECNFFVWEDSLNDGTGGRSATRSNSIPASNPRRNGGRGTRGRGGRNGSHTSNMTFVSATGDPISGRRCFVCGDPSHFANVCPNRGV* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0426 908 SMART toprim5 2 137 IPR006171 -
Apr1g0426 908 Gene3D Bacterial Topoisomerase I, domain 1 623 669 - -
Apr1g0426 908 ProSiteProfiles Zinc finger CCHC-type profile. 888 905 IPR001878 GO:0003676|GO:0008270
Apr1g0426 908 Pfam Zinc knuckle 757 772 IPR001878 GO:0003676|GO:0008270
Apr1g0426 908 Gene3D Topoisomerase I, domain 2 171 595 IPR013824 -
Apr1g0426 908 PANTHER DNA TOPOISOMERASE 3-ALPHA 1 695 - -
Apr1g0426 908 SMART topIaneu2 287 547 IPR003602 GO:0003677|GO:0003916|GO:0006265
Apr1g0426 908 Pfam Topoisomerase DNA binding C4 zinc finger 632 669 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Apr1g0426 908 ProSiteProfiles Toprim domain profile. 2 147 IPR006171 -
Apr1g0426 908 MobiDBLite consensus disorder prediction 836 854 - -
Apr1g0426 908 CDD TOPRIM_TopoIA_TopoIII 2 161 IPR034144 -
Apr1g0426 908 PANTHER PROKARYOTIC DNA TOPOISOMERASE 1 695 IPR000380 GO:0003677|GO:0003917|GO:0006265
Apr1g0426 908 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 324 338 IPR023406 GO:0003917
Apr1g0426 908 PRINTS Prokaryotic DNA topoisomerase I signature 111 124 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr1g0426 908 PRINTS Prokaryotic DNA topoisomerase I signature 211 229 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr1g0426 908 PRINTS Prokaryotic DNA topoisomerase I signature 329 338 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr1g0426 908 PRINTS Prokaryotic DNA topoisomerase I signature 411 427 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr1g0426 908 PRINTS Prokaryotic DNA topoisomerase I signature 509 523 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr1g0426 908 SMART c2hcfinal6 889 905 IPR001878 GO:0003676|GO:0008270
Apr1g0426 908 SMART c2hcfinal6 757 773 IPR001878 GO:0003676|GO:0008270
Apr1g0426 908 Gene3D - 1 164 - -
Apr1g0426 908 CDD TOP1Ac 168 595 IPR013497 GO:0003677|GO:0003916|GO:0006265
Apr1g0426 908 ProSiteProfiles Zinc finger CCHC-type profile. 758 772 IPR001878 GO:0003676|GO:0008270
Apr1g0426 908 SUPERFAMILY Prokaryotic type I DNA topoisomerase 3 593 IPR023405 -
Apr1g0426 908 Gene3D Topoisomerase I, domain 4 295 425 IPR013826 -
Apr1g0426 908 MobiDBLite consensus disorder prediction 836 877 - -
Apr1g0426 908 Pfam GRF zinc finger 793 832 IPR010666 GO:0008270
Apr1g0426 908 Gene3D Topoisomerase I, domain 3 235 493 IPR013825 -
Apr1g0426 908 SMART topIban2 140 241 IPR003601 GO:0003677|GO:0003916|GO:0006265
Apr1g0426 908 SUPERFAMILY Retrovirus zinc finger-like domains 742 779 IPR036875 GO:0003676|GO:0008270
Apr1g0426 908 Pfam Toprim domain 4 148 IPR006171 -
Apr1g0426 908 Pfam DNA topoisomerase 166 584 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0426 Apr-Chr1 5239921 5270288 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0426 K03165 - gmx:100818971 1586.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0426 1 5239921 5270288 Apr1g0426 1 5239921 5270288 ECH