Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0398 ATGGACCGTAGGAGTTGGCTATGGCGAAGAAAGTCATCTGAGAAAAGTCCAGGTGAAACTGAGAGTTTTGGATCAATGTCATCTCATTCAGAAAGATTCTTTGATGATCAGGTTTATTCCACCCAAGCTACTTCATCTCCAGAAGTCATGTGTGAGGCTGCACCAAATGATGAAGAAGTTACTGACGCGAGGACCCTAAGAGAAAAATTATCTGCTGCTCTCTTAAACATTAGTGCCAAAGAAGACTTGGTAAAGCAGCATGCTAAAGTTGCTGAAGAAGCTGTATCAGGCTGGGAGAAGGCTGAAAGTGAAGTGTCGAGTTTAAAACAACAACTCGATGCTGCCAAACAGAAAAATTCAGTTCTTGAATACCAAGTCAGTCATCTTGATGGGGCACTCAACGAGTGTATGAAGCAGCTTAGACATGCTAAAGAAGAACAAGAGCTAAAGATCCATGAAACTGTTGCAAATAACGCTCATAGCTTGGAATCCAACAGATCCAACCTTGAAAGCAAAGGTGTTGAGCTCAAGACTCAACTTCAAAGAGCTAAACCAGATGCTGCTACATCAGTTCATTCTGATCTTCACCAGAAGCTTGAAGATGTGGAGAAAGAGAATTCAAGCCTTAAAATTGAGCTGCAATCTCGACTCGAGGAACTTGAGTTCAGGACCATAGAGAGGGATTTGAGTACTCAAGCTGCTGAAGCAGCAAGCAAGCAACATTTGGAGAGTATAAAGAAGGTGGCTAAGCTTGAAGCTGAATGCCGTAAACTGAAAGCCGTCGCTCGCAAAACACTCTCTGCTAATGATCACAAGTCTATGACTGCCTCTTCAGTTTATGTAGAGTCTTTCACTGATAGCATGTCAGACAGTGGAGAGGGGCAAATTGTAGTTGAAAGTGATATGCACAAATTAGGAGGATGGGATATGAATGAAGGTGAGCCAAGCCATTGTGACTCGTGGCCATCAACTTCAACTACAGAAATTGATCAATTTACGAATCAAAACACTAAAGAAAAAAATCTTATGGTCTTGTCAACTGAGATCAATCTGATGGATGATTTCCTTGAAATGGAAAGGCTTGCTGCATTGCCAGATACAGAAAGTGTAAGCAGTTTTCCAGTGGTAGCTACTACATTTGACCAACTTAATGTTGGCCATGGCATAGTGAATGCTGAAGTGGAAACTATGGTTCAAAAGAATGCTGCATTGGAAAAGAAGCTAGAGAAAATGGAGGCAGATAAACTTGATTTAGAGATGGATCTAATTGAGTGCCAAAAGCAGCTTGAGGCGTCACAAAGTAGGATAAAGGAAGTAGAGTTGGAGGTAGTAGAGCTTCAAACTCGATTAGCTCTTACAAACAAATCGAATGAAGAAGCATATGAAGAACTAAAAGCAACCCAAGACAAGAATGAGATAGCTGAGTCTAAACTCAGAGTTGCTCAAACTGAAGCAGAAGAATTGGTTTCAAAGATTTGTTCACTAGAGGAAGAGATTGAGAAAGAGAAAGCTTTGTCTGCTGAGAATTTGGCCAAGTGTGAGAAGTTGGAGGATGAACTTTCGAGAATGAAGCACGAAGCTCAACTCCATCAAGAGACTGAGATACAACATGAGGCAGGTGTTAATAGCGAGTTAAAGCAGGAGAAGGAACTAGTATTGGCTGCTACTAGATTTGCTGAGTGCCGGAAAACCATTGAATCTCTTGGATTGCAGTTAAAGTCCCTTGCAACATTGGAAGACTTACTTGATTCAGAGGTCAACCCTATGGAGTTAACTTGTGAAGCTACATCAGCATCCCAAAACGGTGGTGAACAGTTGAAGTTACATAATTTTGATTTGAGTTTCTCCAAAAGGGATTCTGAATCTTCAGGTTCACTAAACCCATCTATTACCTATGCAAAAAACCTTAGTACTTTTGGTAGGTTCCACCCTAGAAGCAAGAGTGTAAGCAGAACAGCTAGTCATTGA 1968 0.4116 MDRRSWLWRRKSSEKSPGETESFGSMSSHSERFFDDQVYSTQATSSPEVMCEAAPNDEEVTDARTLREKLSAALLNISAKEDLVKQHAKVAEEAVSGWEKAESEVSSLKQQLDAAKQKNSVLEYQVSHLDGALNECMKQLRHAKEEQELKIHETVANNAHSLESNRSNLESKGVELKTQLQRAKPDAATSVHSDLHQKLEDVEKENSSLKIELQSRLEELEFRTIERDLSTQAAEAASKQHLESIKKVAKLEAECRKLKAVARKTLSANDHKSMTASSVYVESFTDSMSDSGEGQIVVESDMHKLGGWDMNEGEPSHCDSWPSTSTTEIDQFTNQNTKEKNLMVLSTEINLMDDFLEMERLAALPDTESVSSFPVVATTFDQLNVGHGIVNAEVETMVQKNAALEKKLEKMEADKLDLEMDLIECQKQLEASQSRIKEVELEVVELQTRLALTNKSNEEAYEELKATQDKNEIAESKLRVAQTEAEELVSKICSLEEEIEKEKALSAENLAKCEKLEDELSRMKHEAQLHQETEIQHEAGVNSELKQEKELVLAATRFAECRKTIESLGLQLKSLATLEDLLDSEVNPMELTCEATSASQNGGEQLKLHNFDLSFSKRDSESSGSLNPSITYAKNLSTFGRFHPRSKSVSRTASH* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0398 655 Coils Coil 394 491 - -
Apr1g0398 655 Coils Coil 234 254 - -
Apr1g0398 655 PANTHER FILAMENT-LIKE PLANT PROTEIN 1 645 - -
Apr1g0398 655 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 645 - -
Apr1g0398 655 Coils Coil 499 533 - -
Apr1g0398 655 Coils Coil 137 172 - -
Apr1g0398 655 Coils Coil 98 125 - -
Apr1g0398 655 MobiDBLite consensus disorder prediction 1 17 - -
Apr1g0398 655 SUPERFAMILY Tropomyosin 391 587 - -
Apr1g0398 655 Coils Coil 192 219 - -
Apr1g0398 655 MobiDBLite consensus disorder prediction 1 29 - -
Apr1g0398 655 Pfam Filament-like plant protein, long coiled-coil 80 186 IPR008587 -
Apr1g0398 655 Pfam Filament-like plant protein, long coiled-coil 393 577 IPR008587 -
Apr1g0398 655 Pfam Filament-like plant protein, long coiled-coil 188 266 IPR008587 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0398 Apr-Chr1 4999434 5003734 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0398 - - gmx:100810372 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0398 1 4999434 5003734 Apr1g0398 1 4999434 5003734 ECH
Apr2g1064 2 16985375 16990166 Apr1g0398 1 4999434 5003734 ECH