Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0394 ATGTGGCGTCGAACCTTCTCGAAACTCCACCTCAGAGCTTCGGGCTTAGGGTTTCTGAGACGATCGTTCTCGTGCGAACCGGGGAAGAGGTTCGCGGCGTTATGGGGAAACGGCGATTACGGAAGATTGGGTCTGGGAAACTTGGATTCCCGATGGACACCCGCTGTTTGCTCCGCGCTTCGCAACGAAACCCTTAAGGCCATTGCTTGTGGCGGTGCTCACACCCTCTTCTTAACAGACAATGGATGCGTTTATGCTGCTGGTCTCAATGATTTCGGACAGCTTGGTATATCAGAGAGTAAACACTACTCAGTGGAGCCACTTCGTGTTTTTGGACACGAGAAGAAAATTGTGCAGATCTCTGCTGGTTATAATCATTCTTGTGCAATTACAGTGGATGGAGAACTATACATGTGGGGAAAAAATACAAGTGGGCAGCTTGGACTTGGAAAAAGGGCTTCAAACATAGTTCCTTTGCCAACCAAAGTGGAATACTTGGATGGAATCAACATTAAAATGGCGGCTCTGGGTTCTGAGCACTCAATGGCTATTAGTGATGGAGGAGAAGCCTTTAGTTGGGGAATGGGAGTGTCTGGTATACTTGGCCATGGTCATGAGTCAAGCATCCTAGGATTCTTCAAAAGTAACAGTGAGTATACCCCAAGGCTTATAAAAGATCTTGAAGGAATCAAGGTAAAATATGTAGCTGCTGGGTTACTGAATTCAGCATGTACTGATGAAAATGGTTCTGTTTTTATATTTGGTGAAAGAGGGATTGACAAATTGCGTTTAAAGGAGATGAGCAATGCAACAAAACCATCCTTGATTAGTGAACTCCCATACTCAAAAGAAGTTGCTTGCGGTGGCTATCACACCTGTGTACTGACAAATTCTGGTGAACTTTATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGTATTGGTTCATCAGATGTTATTCATCTTCCTGAAAAGGTTCAAGGGCCATTCTTGAAGTCATCTGTTAGCCAGGTTTCATGTGGTTGGAAGCATACTGCAGCCATTTCTGTTGCAGATTTGCTATGGAGATTTGATGTAATACATAGCCCCTGTTTGTATTGTACAAAAGGAAGAGTCTTCACATGGGGCTGGGGAGGATCCAATGGGACTTTCTCTGAAGTTGGATATTCTTCAGGTGGACAATTGGGTCATGGAAGTGATGTGGACCGTGTAAATCCTACTAGAGTTTGTTTTGGAGAAGAAGTGAAAGCATTGCAAGTTTCATGTGGGTTCAATCATACAGGTGCTATACTTGAACATACATAG 1305 0.4406 MWRRTFSKLHLRASGLGFLRRSFSCEPGKRFAALWGNGDYGRLGLGNLDSRWTPAVCSALRNETLKAIACGGAHTLFLTDNGCVYAAGLNDFGQLGISESKHYSVEPLRVFGHEKKIVQISAGYNHSCAITVDGELYMWGKNTSGQLGLGKRASNIVPLPTKVEYLDGINIKMAALGSEHSMAISDGGEAFSWGMGVSGILGHGHESSILGFFKSNSEYTPRLIKDLEGIKVKYVAAGLLNSACTDENGSVFIFGERGIDKLRLKEMSNATKPSLISELPYSKEVACGGYHTCVLTNSGELYTWGSNENGCLGIGSSDVIHLPEKVQGPFLKSSVSQVSCGWKHTAAISVADLLWRFDVIHSPCLYCTKGRVFTWGWGGSNGTFSEVGYSSGGQLGHGSDVDRVNPTRVCFGEEVKALQVSCGFNHTGAILEHT* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0394 434 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 298 IPR000408 -
Apr1g0394 434 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 28 433 - -
Apr1g0394 434 Pfam Regulator of chromosome condensation (RCC1) repeat 188 239 IPR000408 -
Apr1g0394 434 Pfam Regulator of chromosome condensation (RCC1) repeat 388 430 IPR000408 -
Apr1g0394 434 Pfam Regulator of chromosome condensation (RCC1) repeat 35 78 IPR000408 -
Apr1g0394 434 Pfam Regulator of chromosome condensation (RCC1) repeat 133 184 IPR000408 -
Apr1g0394 434 Pfam Regulator of chromosome condensation (RCC1) repeat 298 348 IPR000408 -
Apr1g0394 434 Pfam Regulator of chromosome condensation (RCC1) repeat 81 130 IPR000408 -
Apr1g0394 434 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 30 81 IPR000408 -
Apr1g0394 434 PANTHER OS11G0545800 PROTEIN 28 433 - -
Apr1g0394 434 SUPERFAMILY RCC1/BLIP-II 336 431 IPR009091 -
Apr1g0394 434 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 134 187 IPR000408 -
Apr1g0394 434 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 188 248 IPR000408 -
Apr1g0394 434 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 351 IPR000408 -
Apr1g0394 434 SUPERFAMILY RCC1/BLIP-II 34 350 IPR009091 -
Apr1g0394 434 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 82 133 IPR000408 -
Apr1g0394 434 Gene3D - 31 194 IPR009091 -
Apr1g0394 434 Gene3D - 198 434 IPR009091 -
Apr1g0394 434 PRINTS Chromosome condensation regulator RCC1 signature 31 47 IPR000408 -
Apr1g0394 434 PRINTS Chromosome condensation regulator RCC1 signature 65 78 IPR000408 -
Apr1g0394 434 PRINTS Chromosome condensation regulator RCC1 signature 84 100 IPR000408 -
Apr1g0394 434 PRINTS Chromosome condensation regulator RCC1 signature 134 150 IPR000408 -
Apr1g0394 434 PRINTS Chromosome condensation regulator RCC1 signature 174 190 IPR000408 -
Apr1g0394 434 PRINTS Chromosome condensation regulator RCC1 signature 190 204 IPR000408 -
Apr1g0394 434 PRINTS Chromosome condensation regulator RCC1 signature 288 306 IPR000408 -
Apr1g0394 434 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 433 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0394 Apr-Chr1 4949001 4955477 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0394 - - vun:114196144 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0394 1 4949001 4955477 Apr1g0394 1 4949001 4955477 ECH