Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0383 ATGCATCCCTTTCTGGGCTCCAAAAACCACACCACCGAACCCGGTTCAGCTCTAAGCACTCACAAACCCGATTCATCCCAGCTTCACCACATGCCGCCCGTGTTCCGCTCCCTCTCCACGCGCACCCGCAACCGCTCCTCCTCCTCCTCCTCCCCCTCTGCCCCCACCCTTGCGGTGCAGCGATCCGCTTCCGCGCGGTACTCGCGCCAGAACACCACGCGCGAGGTCATTCTAAACGACATCGTTGGCAACGGAATTTCTGGCATTCTCTACAAGTGGGTCAACTACGGGCGCGGGTGGCGTCCACGCTGGTTCGTTCTCCACGATGGCGTTCTCTCTTATTACAAAATTCACGGTTCCGATAAGCTCGTTCTCAACAACGATGTTGAGACTGGTTCTAAGGTTATCGGCGAAGAGTCCCTTCGCCGCATCAACAGCCACCGCCATTGCCCCTCACGCTCTCGCAAACCCGCCAGCGAAATTCATCTCATGGTGTGTTCGGTGAGAGAGAACAAATCAGATGAGAGAAGGTTTTCTGTATGTACGGGGACAAAGAAGAGGTTGCATTTGAGGGCGGAGAGTAGGGAAGATAGGGCAACATGGGTGGAAGCAATGATGGCAGTGAAGGATATCTATCCTCGGTTGCCCAATGCAGAGATTATGTCACCTGTTGTGTCAGTGGTGATTTCCACGGAGAAGTTAAGGCAGCGACTTTTACAAGAGGGTCTCAATGAGGTTGCTATTCACCAATGTGAGGACATCATGAAAGCAGAGATTTCACAGTTGCATAAGCATATTGTGGCTCTCAAGCAGAAGCAGTTGCTACTAACGGACACGCTGCGCCATTTAGAGGCTGAGAAGGTTGACTTGGAGAACACTCTTGTTGAAGACCAAAGGCAATCAAAGGATATTGAAGCTAATCCCTATCTATCATCGCATGAAAAGTATAGTGAGGGAAGTGGTAGTGATTCTTCTGATGAGCACCATCGGCATGATTCTGATGATGACGAGGATGCATTCTTTGATACATGTGAAATTCTTTCAACAAGTTCTGACCATCTGAGATCCATCCATGATTCTGAACAGTGTGAAGATAGTCCAAATGGGACATGTGATGTAAAATCAGCCATTGGATCTGTTGGATTTAACTATCCTCATATCAACCGACGAAATAAGTTACCTGATCCTGTTGAGAAGGAGAGTGGAGTGAGTTTATGGTCAATAATAAAAGACAATATCGGCAAGGATCTTACAAAAGTTTGTCTCCCAGTTTACTTTAATGAGCCCCTATCCTCATTGCAGAAATGTTTTGAAGATATAGAGTACTCTTACCTTCTAGACCAAGCATATGAATGGGGTAAAAGGGGTAACAGTCTAATGAGGATGCTACATGTGGCTGCATTTGCAGTTTCAGGGTATGCTAGCACCAGTGGTAGAAGTTGCAAACCATTTAATCCACTGTTGGGTGAAACATATGAGGCAGATTATCCGGATAAAGGCGTTCGCTTTATCTCTGAGAAGGTCAGTCATCACCCAATGGTTGTTGCATGCCATTGTGATGGCCCCGGCTGGAAATTTTGGGGTGAGAGCACTTTAAAAAGTAAATTTTGGGGTCGTTCAATTCAGCTTGATCCTGTTGGTATATTGACTTTGGAATTTGATGATGGAGAAGTCTTTCATTGGAGCAAGGTAACCACGTCCATTTACAACCTCATTTTAGGAAAACTCTACTGCGACCATTATGGTACAATGCGGGTAGAGGGGAACCGTGAGTATTCATGTAAGATCAAATTCAAGGAGCAGTCAATCATTGATAGGAACCCTCACCAGGTTCAAGGCGTGGTGGAAGATAAGAAAGGTAGAACAGCGGCAACTCTATTTGGGAAGTGGGATGAGAGCTTGCATTACGTAATTGGAGGGAATTCAGGGAAAGGAAAAGGGTCTAATGTGTCATCAAAACCACATCTTCTGTGGAAGCGGAACCCAGCACCTGAGCACCAGACAAGATATAACCTTACACAGTTTGCTATTACACTAAATGAACTCACACCTGGACTACAGGAGAAGTTGCCACCAACAGATTCAAGGCTAAGACCTGATCAAAGGTGTTTGGAGAATGGAGAGTATGAAATGGCCAATTCTGAGAAGTTGAGGCTGGAACAAAGACAGCGGCAGGCACGGAAGATGCAAGAGAAGGGATGGAAACCAAAGTGGTTTTCTAAGGAAAAAGGCAGCAACAGTTACCGTTATGTTGGTGGGTACTGGGAAACTAGGGAAAATGGGAACTGGGAGTCTTGTCCTGACATTTTTGGCCAACCCTCCTCAACTGATACTGATTTTACCTCAACTCCATAA 2355 0.465 MHPFLGSKNHTTEPGSALSTHKPDSSQLHHMPPVFRSLSTRTRNRSSSSSSPSAPTLAVQRSASARYSRQNTTREVILNDIVGNGISGILYKWVNYGRGWRPRWFVLHDGVLSYYKIHGSDKLVLNNDVETGSKVIGEESLRRINSHRHCPSRSRKPASEIHLMVCSVRENKSDERRFSVCTGTKKRLHLRAESREDRATWVEAMMAVKDIYPRLPNAEIMSPVVSVVISTEKLRQRLLQEGLNEVAIHQCEDIMKAEISQLHKHIVALKQKQLLLTDTLRHLEAEKVDLENTLVEDQRQSKDIEANPYLSSHEKYSEGSGSDSSDEHHRHDSDDDEDAFFDTCEILSTSSDHLRSIHDSEQCEDSPNGTCDVKSAIGSVGFNYPHINRRNKLPDPVEKESGVSLWSIIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDIEYSYLLDQAYEWGKRGNSLMRMLHVAAFAVSGYASTSGRSCKPFNPLLGETYEADYPDKGVRFISEKVSHHPMVVACHCDGPGWKFWGESTLKSKFWGRSIQLDPVGILTLEFDDGEVFHWSKVTTSIYNLILGKLYCDHYGTMRVEGNREYSCKIKFKEQSIIDRNPHQVQGVVEDKKGRTAATLFGKWDESLHYVIGGNSGKGKGSNVSSKPHLLWKRNPAPEHQTRYNLTQFAITLNELTPGLQEKLPPTDSRLRPDQRCLENGEYEMANSEKLRLEQRQRQARKMQEKGWKPKWFSKEKGSNSYRYVGGYWETRENGNWESCPDIFGQPSSTDTDFTSTP* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0383 784 ProSiteProfiles PH domain profile. 83 210 IPR001849 -
Apr1g0383 784 SUPERFAMILY PH domain-like 86 219 - -
Apr1g0383 784 MobiDBLite consensus disorder prediction 765 784 - -
Apr1g0383 784 MobiDBLite consensus disorder prediction 1 69 - -
Apr1g0383 784 Pfam Oxysterol-binding protein 404 759 IPR000648 GO:0008289
Apr1g0383 784 MobiDBLite consensus disorder prediction 37 69 - -
Apr1g0383 784 MobiDBLite consensus disorder prediction 299 335 - -
Apr1g0383 784 Coils Coil 709 732 - -
Apr1g0383 784 Gene3D - 490 668 - -
Apr1g0383 784 MobiDBLite consensus disorder prediction 9 26 - -
Apr1g0383 784 Gene3D - 84 212 IPR011993 -
Apr1g0383 784 SMART PH_update 84 212 IPR001849 -
Apr1g0383 784 MobiDBLite consensus disorder prediction 319 335 - -
Apr1g0383 784 SUPERFAMILY Oxysterol-binding protein-like 399 772 IPR037239 -
Apr1g0383 784 Gene3D - 701 765 - -
Apr1g0383 784 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 33 775 - -
Apr1g0383 784 Coils Coil 280 307 - -
Apr1g0383 784 Pfam Pleckstrin homology domain 91 205 - -
Apr1g0383 784 MobiDBLite consensus disorder prediction 767 784 - -
Apr1g0383 784 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 33 775 IPR000648 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0383 Apr-Chr1 4797921 4804904 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0383 K20456 - gmx:100781218 1207.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0383 1 4797921 4804904 Apr1g0383 1 4797921 4804904 ECH