Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0336 ATGAAGTGGCCAACATGGAAGTCCAAGTCCAACACCATGGCAATGGCTGTGTTGTTGCTTCAGCTGAGTTTTTCCTTGAAAGTGTTGTGCCACTCTTCTCCTGCAGATAGAATTGCTGTGCTTCCTGGCCAACCCCACGTGGGCTTTCAACAATTCTCAGGATATGTCACAGTGGATGAAAAAAAACATAAATCTCTGTTTTACTATTTTGTTGAATCAGAAACTGATTCAGCTTCAAAGCCTCTTGTTCTATGGCTCAATGGAGGACCTGGTTGTTCTTCTCTAGGAGTAGGCGCATTCTCAGAAAATGGACCCTTTAGACCAAATGGTGAATTTCTTGTTAAAAATGATTATAGTTGGAACAAAGAGGCAAACATGCTGTATTTGGAGACACCAATTGGAGTGGGATTTTCTTATGCTAAAGGTAGTTCCTCCTATATGACAGTGAATGATGAGGCAACAGCAAGGGACAACCTTGTATTCCTGCAACGTTGGTTCAACAAGTTCCCTCAATATAGGACCAGAGATTTGTTTCTAACAGGGGAAAGCTATGCAGGACATTATGTTCCTCAACTTGCAAAGCTCATGATTGAAATGAACACAAAGAACAAGATATTCAATCTGAAAGGCATTGCCTTGGGTAATCCAGTTATAGAATATGCCACTGACTTCAATTCAAGAGCTGAGTTCTTCTGGTCTCATGGACTAATATCAGATTCAACGTACAATATGTTCACTACAGTGTGTAACTATTCTAGGTATGTGAGTGAGTACTATAGAGACTCAGTTTCACCTCTTTGTTCAAAGGTTATGGGGCAAGTAAGCAGAGAAACCAGTAAATTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATTTCCTCAGTGCTATCACAATCCAAGATTATTTGTCCTCAAACACAACAAGCAAATGAGAGCATAGATGTGTGTGTAGATGACAAGGTTACAAACTATTTAAACAGAAGAGATGTACAAGAGGCACTTCATGCAAAGCTTGTTGGAGTTCGCAAGTGGGACGTTTGCAGCAACATCCTGGACTATGATATGCTCAATTTGGAAGTGCCTACACTCCCTGTTGTTGGATCACTGATAAAAGCTGGAGTTCAGGTCTTAATTTACAGTGGAGATCAAGATTCAGTAATTCCACTGACCGGAAGCCGCACCTTAGTTCAAAAGTTGGCTAGACAATTAGTACTGAACACAACAGTCCCTTACAGAGTATGGTTTGAAGGCCAGCAGGTTGGTGGGTGGACTCAAGTTTATGGCAATATCCTCTCATTTGCCACAGTTAGAGGTGCCTCTCATGAAGCCCCTTTCTCACAGCCTGAAAGATCACTTGTGCTATTCAAGTCATTCTTAGAAGGAAGGCCTTTACCAGAAGTCTTCTGA 1410 0.4142 MKWPTWKSKSNTMAMAVLLLQLSFSLKVLCHSSPADRIAVLPGQPHVGFQQFSGYVTVDEKKHKSLFYYFVESETDSASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLVKNDYSWNKEANMLYLETPIGVGFSYAKGSSSYMTVNDEATARDNLVFLQRWFNKFPQYRTRDLFLTGESYAGHYVPQLAKLMIEMNTKNKIFNLKGIALGNPVIEYATDFNSRAEFFWSHGLISDSTYNMFTTVCNYSRYVSEYYRDSVSPLCSKVMGQVSRETSKFVDKYDVTLDVCISSVLSQSKIICPQTQQANESIDVCVDDKVTNYLNRRDVQEALHAKLVGVRKWDVCSNILDYDMLNLEVPTLPVVGSLIKAGVQVLIYSGDQDSVIPLTGSRTLVQKLARQLVLNTTVPYRVWFEGQQVGGWTQVYGNILSFATVRGASHEAPFSQPERSLVLFKSFLEGRPLPEVF* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0336 469 Gene3D alpha/beta hydrolase 33 294 IPR029058 -
Apr1g0336 469 ProSitePatterns Serine carboxypeptidases, histidine active site. 432 449 IPR033124 GO:0004185
Apr1g0336 469 ProSitePatterns Serine carboxypeptidases, serine active site. 179 186 IPR018202 GO:0004185
Apr1g0336 469 Gene3D - 317 353 - -
Apr1g0336 469 PANTHER CARBOXYPEPTIDASE 31 467 - -
Apr1g0336 469 Gene3D - 363 462 - -
Apr1g0336 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 128 IPR001563 GO:0004185|GO:0006508
Apr1g0336 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 139 IPR001563 GO:0004185|GO:0006508
Apr1g0336 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Apr1g0336 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185|GO:0006508
Apr1g0336 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 467 IPR001563 GO:0004185|GO:0006508
Apr1g0336 469 Pfam Serine carboxypeptidase 43 462 IPR001563 GO:0004185|GO:0006508
Apr1g0336 469 SUPERFAMILY alpha/beta-Hydrolases 45 466 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0336 Apr-Chr1 4077429 4081023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0336 325 465 Calmodulin-binding Proteins AT2G22960 27.660 1.23e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0336 K16297 - gmx:100795668 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0336 1 4077429 4081023 Apr1g0336 1 4077429 4081023 ECH