Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0321 ATGATGAAGAGGAAGAGAGAAGAGAAGGAGGACATGGATATTGTGTGGCAGACCCCAGCAAATCCCCCGCACCCGCATGATTACGTAGTTCGAAACGGAATTCGATTCGTTAAACCATACTACTTCGAATTTATCGCTCATGTTAAAAATCGATGGGCAGGGAAAACCATTGTAGATTTATTCGCTGAGGAGTTTAAGGGTCGACCCTATGAATATTATGTTAGTGCTGTTCAATGCGGAAGGATTCAAGTTGATGGTGAGATTGTACCTGTTTCATATATAGTTAAATCATCTCAAAAGATAAGCCATTTCTTGCACAGGCATGAACCACCTGTGCTGGCTTGTGAAGTTCCAATCCTTCAAAAGGAACCAGATGTGCTAACTGTTTGTAAGCCACCATCTGTCCCTGTACATCCATGTGGTCAATATCGAAAGAACACTGTTGTTGGCATCCTTCAAGCAGAGCATGGTTTGGCACCACTATTTCCTGTTCATCGACTGGATCGCCTTGTCTCAGGACTTCTTATTTTGGCCAGAAATGCTTCCAAAGCTGACATTTTTAGGCAACAGATCGAAGCTGGCTTAGTCCGGAAACAGTATATAGCAAAAGTAGTTGGAGAATTTCCTGAGGATGAGCTACTTGTTGATGCAAATATAGACTATAATGCACGAGAAGGAAGAAGCACAGCAGAGGTCAGAGACTCTGCAAAGGGCAAGGCTGCCTCTACAAAATTTACTCGGATTAGTACCAATGGTACTGAAAGTATTATTTTATGTGAACCTATCACTGGCCGTACTCATCAGATACGAGTTCATTTACAGTGTTCAGGTCACCCAATAGCCAATGACTTGCTGTACATCTCAGAACAAACTGTTGATCGATCTATTAAAGGGTTGAGTGCTGACAGATCAGCAAGCATAACTGATGCTTCTCTGAAATCAAATTTTGAGGAAAAAGTGCTCAATGAATGTGAAGAAAATTCCAATGGAGATTTTAGCATTGATCCCATGTGTACAAACTGCCCAAATTTGGCTCCCAAAGGATATGATGGCAATGAAGAAGGTCTTTGGCTACACTGTATTCGGTACTCTGGACCTGGATGGACTTACGAGTGCCCGTACCCTGATTGGGCGAAACTTAGCTAG 1146 0.425 MMKRKREEKEDMDIVWQTPANPPHPHDYVVRNGIRFVKPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYYVSAVQCGRIQVDGEIVPVSYIVKSSQKISHFLHRHEPPVLACEVPILQKEPDVLTVCKPPSVPVHPCGQYRKNTVVGILQAEHGLAPLFPVHRLDRLVSGLLILARNASKADIFRQQIEAGLVRKQYIAKVVGEFPEDELLVDANIDYNAREGRSTAEVRDSAKGKAASTKFTRISTNGTESIILCEPITGRTHQIRVHLQCSGHPIANDLLYISEQTVDRSIKGLSADRSASITDASLKSNFEEKVLNECEENSNGDFSIDPMCTNCPNLAPKGYDGNEEGLWLHCIRYSGPGWTYECPYPDWAKLS* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0321 381 ProSiteProfiles S4 RNA-binding domain profile. 55 124 - -
Apr1g0321 381 ProSitePatterns Rlu family of pseudouridine synthase signature. 164 178 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr1g0321 381 CDD PseudoU_synth_ScRIB2 102 379 - -
Apr1g0321 381 Pfam RNA pseudouridylate synthase 126 274 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr1g0321 381 PANTHER PSEUDOURIDINE SYNTHASE 23 380 - -
Apr1g0321 381 SUPERFAMILY Pseudouridine synthase 109 378 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr1g0321 381 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 51 295 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Apr1g0321 381 Gene3D Pseudouridine synthase 111 362 - -
Apr1g0321 381 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 23 380 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0321 K15454 - gmx:100811500 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0321 1 3854617 3867731 Apr1g0321 1 3854617 3867731 ECH