Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0316 ATGGAAGTGACGAGAGACCCCAATTCAAACGATTCAGACTCAGAACTCGAACTCTACACAATCCCTAGCTCTTCCGGATGGTTCGCGTGGGACGAAATCCACGAAACGGAGAAAACGGCTTTCAAGGAATTCTTCGACGGAACCTCGATATCTCGAACGCCGAAGATATACAAAGAGTACCGAGACTTCGTCATCAACAAGTTCAGAGAAGAGCCTTCGAGGAGGCTCACATTCACCGAGGTGCGAAAATCGCTGGTCGGTGATGTCACGTTCCTGCACAAGGTCTTCCTCTTCTTGGAAACCTGGGGTTTGATCAACTACGGCGCCCCTTCAGGTGCGGATGCGGAGAAGGAGGAGGAGGAGGAGGGGGAAGAGAGATGCAAGGTTCGCCTCGATGAAGGGGCTCCCAATGGGATTCGCGTCGTGGCCACGCCGAACTCGTTGAAACCCATGTCTGTGCCTCGCAGTACCAAGAGTGGTGGTGGTGGCAATGCGAGTGTTGGGGCTTCTATCAAATTGCCGCCTTTGGCGTCCTACTCGGATGTTTACGGCGATTTGATTCGGCAGAAGGAGTTGAATTGTGGCATTTGCGGTGAAAAATGTGGTTCTGGACACTACCGAAGTAACCAGGATAATTTCATTATTTGTACAAATTGTTTCACTAATGGAAATTATGGGGAGAAAAGGTCTGCAGAGGATTTTGTATTAAGTGAGTCAACTGAAAATAATGGCAAACATGGTACTGTCTGGACTGAGGGAGAAACTCTTCTCCTTTTAGAGTCTGTTTTGAAGCATGGGGATGACTGGGACCTTGTTGCTCAAAGTGTTCAAACCAAGACTAAACTTGATTGTATCTCAAAACTCATTGAGCTGCCTTTTGGGGAGCTCATGTTGGGCCCTGCTCACAGAAATGGTAACAATAACAGTGCTAATGGCATTATGAACAATGCAAAACAAGTTCAGTCATCTTCATCTGACCACCAAGAAATTTCAAAGACGAAGGATCAATCTCCTGATGATCTTACAAATGAAAATGAGCAGAATGGAGATGCTATGCAAGAAAGTCCTTCAAAAAGACAACGTGTTGCTGCCCTTTCAGATTCCAGCACTTCGCTCATGAAGCAGGTGGGACTGATCTCTACTGTGGTTGACCCTCATATCGCAGCTGCTGCAGCTGATGCTGCTGTTTCAGCACTTTGTGAAGAAAACTTGTGTCCAAGGGAGATATTTGATGTTGAAGAGGACTATGCTTCTCATGTGAACTCTGTGAATAGTTATTCAGAAAGATCCCTTGAGGGTGAAGGTTTAGATATGGAGAGGTCCACTCATTCAGAAGTGGATGACGGATGGTCGAAGGATGGCATACCATTGACACTGCGTGTAAGAGCTGCCATTGCAACTGCTCTTGGAGCTGCTGCTGCTCGAGCAAAGTTGCTGGCAGACCAGGAAGAGAGAGAGATTGAGCATTTAGTTGCAACTATAATTGAAGCACAGATTGAGAAATTGCAACGCAAGGTTAAGCATTTTGATGATCTGGAGCTGTTGATGGAAAAAGAACACACTGAAATGGAAAATGTAGAAGATTCTCTCTTGACTGAACGGATTGATGTGTTACGGCAAACATTTAGATCTGGAATCACTAGATGGAAGGATTATTCTTATGTAAAATCTTAG 1674 0.4564 MEVTRDPNSNDSDSELELYTIPSSSGWFAWDEIHETEKTAFKEFFDGTSISRTPKIYKEYRDFVINKFREEPSRRLTFTEVRKSLVGDVTFLHKVFLFLETWGLINYGAPSGADAEKEEEEEGEERCKVRLDEGAPNGIRVVATPNSLKPMSVPRSTKSGGGGNASVGASIKLPPLASYSDVYGDLIRQKELNCGICGEKCGSGHYRSNQDNFIICTNCFTNGNYGEKRSAEDFVLSESTENNGKHGTVWTEGETLLLLESVLKHGDDWDLVAQSVQTKTKLDCISKLIELPFGELMLGPAHRNGNNNSANGIMNNAKQVQSSSSDHQEISKTKDQSPDDLTNENEQNGDAMQESPSKRQRVAALSDSSTSLMKQVGLISTVVDPHIAAAAADAAVSALCEENLCPREIFDVEEDYASHVNSVNSYSERSLEGEGLDMERSTHSEVDDGWSKDGIPLTLRVRAAIATALGAAAARAKLLADQEEREIEHLVATIIEAQIEKLQRKVKHFDDLELLMEKEHTEMENVEDSLLTERIDVLRQTFRSGITRWKDYSYVKS* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0316 557 PANTHER SWI/SNF COMPLEX-RELATED 17 548 - -
Apr1g0316 557 MobiDBLite consensus disorder prediction 342 366 - -
Apr1g0316 557 ProSiteProfiles SWIRM domain profile. 19 116 IPR007526 GO:0005515
Apr1g0316 557 Gene3D - 25 111 IPR036388 -
Apr1g0316 557 Gene3D - 246 294 - -
Apr1g0316 557 MobiDBLite consensus disorder prediction 318 366 - -
Apr1g0316 557 Coils Coil 509 529 - -
Apr1g0316 557 CDD SANT 250 287 IPR001005 -
Apr1g0316 557 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 17 548 - -
Apr1g0316 557 ProSiteProfiles SANT domain profile. 245 296 IPR017884 -
Apr1g0316 557 Coils Coil 473 500 - -
Apr1g0316 557 SUPERFAMILY Homeodomain-like 25 108 IPR009057 -
Apr1g0316 557 SUPERFAMILY Homeodomain-like 246 300 IPR009057 -
Apr1g0316 557 Pfam SWIRM-associated region 1 467 542 IPR032451 -
Apr1g0316 557 Pfam SWIRM domain 22 107 IPR007526 GO:0005515
Apr1g0316 557 Pfam Myb-like DNA-binding domain 250 288 IPR001005 -
Apr1g0316 557 SMART sant 246 294 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0316 Apr-Chr1 3759911 3767141 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0316 K11649 - gmx:100790238 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0316 1 3759911 3767141 Apr1g0316 1 3759911 3767141 ECH