Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0313 ATGAATTCAATATCAGCGCCTAGCAACATTGGGCTACAATTTCGAGGAAATATTTGCAATACCAAAATGAAAATCGTAGAGAAGGCAGGGGAGATTTTGAAACTAAGCTTCAATTCTTCATTCAATTCTTGTATATTGAACAATGATAAACGAAGGTCTTCATTGTTGGTGAGTGCGTGTTTTGATGGTAGCTTCTGGGGATTGGATACAGTTGATGGAATGAAACACGCGTCGTTGGCCCCTTTTACGCCAAGCAAATTGGCAAACGAAAGCACCGCACAAACAGCCCTTGATGGCTTCTTGCGTGGAATGTTCGTGGAGGATAAGTTTGTGTATAGGCAGAATTTTGTGGTCAGGTCTTATGAAATTGGACCAGATAAAACTGTCACTATTGAGACACTCATGAATTTTCTCCAGGAAACTGCTCTAAATCAAGTCTCTAGCTTTGGAGTAAGTGGGAACGATTTTGGAACTACTCGCGAGATGGACCTTCGCAAATTGATTTGGGTTGCTACTCGTATTCAAGTTCAAGTACAGAGATATAGCAAATGGGGAGATGAAATTGAAGTTGATACTTGGTTTGATGCTGCTGGAAAAAATGGAATGCGAAGAGATTGGATAATCAGGGATCATTGCACTAAAGAGATTATAGCCAGAGCAACGAGCACATGGGCGATTATGAATAGAGAAACAAGAAGATTATCTAAGATACCTGAAGAAGTTAAACAAGAGATCGTTCCTCTCCACTGTGATAGGCTTGCCATTGCTAGTGAAGAAAAAGATTGTCAGAAGATACACAAACTCACTGATGATACTACTGATAGAGTTCGATCTGGGATGACTCCAAGATGGACTGACATGGACGTTAACCAGCATGTTAACAATGTGAAATATATTGGGTGGATTTTGGAGAGTGTGCCAAGAGAAGTGTTAGTTGATTACAATATGACAAGCATGAAGCTGGAGTTTCGACGTGAATGTACGCAATCAAATGTGTTAGAATCTATGACTAGTCCACCATGCACCGTTACAGATGCTTCCAACCATGACTCTGTTGGGAGAAAAATTGACCTGCAATACACACACCTACTTCGTCTGCAAGATGATAAAACAGAATTGGTCCGAGCCAAAACAGAATGGCATCTTAAGCAAAAGCAAAAGTGA 1164 0.4055 MNSISAPSNIGLQFRGNICNTKMKIVEKAGEILKLSFNSSFNSCILNNDKRRSSLLVSACFDGSFWGLDTVDGMKHASLAPFTPSKLANESTAQTALDGFLRGMFVEDKFVYRQNFVVRSYEIGPDKTVTIETLMNFLQETALNQVSSFGVSGNDFGTTREMDLRKLIWVATRIQVQVQRYSKWGDEIEVDTWFDAAGKNGMRRDWIIRDHCTKEIIARATSTWAIMNRETRRLSKIPEEVKQEIVPLHCDRLAIASEEKDCQKIHKLTDDTTDRVRSGMTPRWTDMDVNQHVNNVKYIGWILESVPREVLVDYNMTSMKLEFRRECTQSNVLESMTSPPCTVTDASNHDSVGRKIDLQYTHLLRLQDDKTELVRAKTEWHLKQKQK* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0313 387 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 85 386 IPR045023 GO:0006633|GO:0016297
Apr1g0313 387 Pfam Acyl-ACP thioesterase 111 381 IPR002864 GO:0006633|GO:0016790
Apr1g0313 387 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 106 254 IPR029069 -
Apr1g0313 387 CDD 4HBT 112 228 - -
Apr1g0313 387 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 85 386 - -
Apr1g0313 387 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 267 381 IPR029069 -
Apr1g0313 387 Gene3D Hotdog Thioesterase 102 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0313 Apr-Chr1 3723055 3724924 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0313 97 383 Acyl Lipid Metabolism Gene Families AT1G08510 53.659 2.07e-103 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0313 K10781 - gmx:100791811 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0313 1 3723055 3724924 Apr1g0313 1 3723055 3724924 ECH