Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0298 ATGGCAATCATTGCTTGCACACTCTCCATCTCCCCTTCCTCCTCTTCATACTCCAATAATTTGCCAAAGCACACCATCAAACCCACCTTCCATCTTCTCAACAAACACACACTTCCTCAACCCCTTCAAATCTCGAGCACCCTCTCTAGCTCCACTTTCGAACCAGCCAAACCTTCCACCACCCCAACAACAACACAACCTTTCCTTCCCTCAATCAAAACCGACAACCTCAAAAAAGGTGCTGACATACTCGTTGAGGCTCTCGAACGCCACGGTGTCACCGATGTCTTTGCCTACCCAGGTGGTTGTTCCATAGATATCCACCAAGCTCTCAAGCGCTCCAACATCATAAGAACCATTCTCCCACGCCATGAACAAGGTGGGGTGTTTGCAGCTGAAGGTTATGCACGTTCCACTGCCCTTCCTGGAGTGTGTGTCACCACCTCTGGACCCGGTGCCACCAACCTTGTCACTGGACTCGCCAATGCTAAGATGGATAGTGTGCCTCTTATAGCAATCACGGGTCAAGTCCAACGAAGAATGATTGGCACTGATTCATTTCAAGAGACCCCTATTGTTGAGATGTCAAAATCTATTACCAAGCATAATTATCTTGTTTTGGATGCTAATGATATTCCTAAGGTCGTTAGCGAGGCCTTCTTCGTGGCCACTTCTGGACGGCCCGGCCCAGTTCTCATCGACGTCCCCAAAGACATCCAACAACAGCTTGCTGTTCCTAACTGGGACCAGCCCATTAAGCTCACCGGCTATATTTCCAGGCTGCCCAAGGTTCCCAGCGAGGCCCAATTGGATCAGATTCTGAGGTTAATAATGGAGGCCAAGAAACCGGTTTTGTACGTTGGGGGTGGTTGTTTGAACTCGAGCGTTGAGTTGAGGAGGTTTGTGGAACTCACTGGGATCCCTGTTGCGAGTACGTTGATGGGTCTTGGGGTTTACCCTATTGGAGATGAACATTCCCTTCAAATGTTGGGTATGCATGGCACTGTCTTTGCTAACTATGCTGTTGATAACAGTGATTTGTTGCTTGCCTTTGGGGTAAGGTTTGATGACCGCGTCACTGGGAAACTAGAGGCTTTTGCCAGCAGGGCTAAGATTGTTCACATTGATATTGATTCTGCTGAGATTGGGAAGAATAAGCTGCCACACGTGTCGGTTTGTGCGGATTTGAAAATGGCTTTGGAGGGTATCAATAGGATTTTGGAGAGTAAGGGTGTGAAGGGTAAGCTTGACCTTGAAGCTTGGAGAGAGGAGATTAGTGTGCAGAAACGAAAGTTTCCATTGAGTTATAAGACGTTTGAGGATGGTGTTATTTGTCCTCAGTATGCAATTGAGGTTCTTGATGAGTTGACAAATGGAGATGCTATTATTAGTACTGGGGTTGGACAGCATCAAATGTGGGCTGCACAGTTTTACAAGTACAAGAGGCCTAGGCAGTGGTTAACATCAGGGGGTCTTGGTGCTATGGGGTTTGGATTGCCTGCTGCTATTGGTGCTGCTGTTGCTAACCCTGATGCAATTGTGGTTGATATTGATGGATATGGTAGTTTCATTATGAATGTTCAGGAGTTGGCAACTATTAGAGTGGAGAATCTCCCTGTAAAGATATTGTTGCTGAATAATCAGCATTTGGGTATGGTGGTTCAGTGGGAGGATCGGTTCTATAAGTCCAATAGAGCTCACACTTATCTGGGAGACCCTTCTAGGGAGACAGAGATATTCCCAAACATGCTTAAGTTTGCTGATGCTTGTGGGATACCTGCTGAACGTGTGACCCACAAAGGAGACTTAAGAGCAGCAATACAGAAAATGTTGGACACCCCTGGCCCTTACCTTCTTGACGCCATTGTACCCCATCAGGAGCATGTCTTGCCAATGATTCCAAGTAATGGATGTTTCAAAGATGTCATAACTCAGGAAAATGACAAAAGGAGTCGTTGA 1959 0.4671 MAIIACTLSISPSSSSYSNNLPKHTIKPTFHLLNKHTLPQPLQISSTLSSSTFEPAKPSTTPTTTQPFLPSIKTDNLKKGADILVEALERHGVTDVFAYPGGCSIDIHQALKRSNIIRTILPRHEQGGVFAAEGYARSTALPGVCVTTSGPGATNLVTGLANAKMDSVPLIAITGQVQRRMIGTDSFQETPIVEMSKSITKHNYLVLDANDIPKVVSEAFFVATSGRPGPVLIDVPKDIQQQLAVPNWDQPIKLTGYISRLPKVPSEAQLDQILRLIMEAKKPVLYVGGGCLNSSVELRRFVELTGIPVASTLMGLGVYPIGDEHSLQMLGMHGTVFANYAVDNSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKLPHVSVCADLKMALEGINRILESKGVKGKLDLEAWREEISVQKRKFPLSYKTFEDGVICPQYAIEVLDELTNGDAIISTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIGAAVANPDAIVVDIDGYGSFIMNVQELATIRVENLPVKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGDPSRETEIFPNMLKFADACGIPAERVTHKGDLRAAIQKMLDTPGPYLLDAIVPHQEHVLPMIPSNGCFKDVITQENDKRSR* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0298 652 Gene3D - 270 434 - -
Apr1g0298 652 MobiDBLite consensus disorder prediction 49 68 - -
Apr1g0298 652 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 446 642 IPR029061 -
Apr1g0298 652 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 466 620 IPR011766 GO:0003824|GO:0030976
Apr1g0298 652 CDD TPP_AHAS 444 635 IPR039368 GO:0030976
Apr1g0298 652 CDD TPP_PYR_POX_like 82 237 - -
Apr1g0298 652 Pfam Thiamine pyrophosphate enzyme, central domain 271 401 IPR012000 GO:0000287|GO:0030976
Apr1g0298 652 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 72 255 IPR029061 -
Apr1g0298 652 TIGRFAM acolac_lg: acetolactate synthase, large subunit, biosynthetic type 79 644 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Apr1g0298 652 Gene3D - 435 621 - -
Apr1g0298 652 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 51 651 IPR045229 -
Apr1g0298 652 Gene3D - 69 261 - -
Apr1g0298 652 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 79 242 IPR012001 GO:0030976
Apr1g0298 652 PANTHER ACETOLACTATE SYNTHASE 51 651 - -
Apr1g0298 652 SUPERFAMILY DHS-like NAD/FAD-binding domain 266 433 IPR029035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0298 Apr-Chr1 3502844 3504802 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0298 K01652 - gmx:100782250 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0298 1 3502844 3504802 Apr1g0298 1 3502844 3504802 ECH