Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0293 ATGAGAAGGCCTGTAAGACACTCCAACAAACTTGACCTATTCGACGGTCTCCCTGACGATCTCATCGTTCTTATTCTCTCCAAACTAAGCTCTGCTGCGTCTTCTCCTTCTGATTTCGTCAATGTTATTTTAACATGCCGGAGGCTGAATCGTTTGGGATTACATCGTATGGTGTTGTCTAAAGCTGGGTCTAAAGTATTTGCTATAAAACCCAAAAACTGGTCAGATTATGCTCACCGTTTTCTTAAACACTGTGCTAACGCCGGTAACGTCGACGCCTGTTACACTCTCGGAATGATCCGATTTTACTGTCTGCAAAACCGTGGGAGCGGGCTTTCGCTGATGGCGAAGGCAGCGATGAAGCTACACGCGCCGGCGCTGTACTCGCTTGCGGTGATTCAGTTCAACGGCAGTGGGGGTTCCAAGCGCGACAAGGACCTACGCGCGGGCGTGGCCCTGTCGGCGCGTGCATCGCTGCTCGGCCACATTGACGCGCTCAGGGAGTTGGGTCATTGCCTCCAGGACGGGTACGGCGTGCGGCAGAACGTCGTGGAGGGACGGAGGCTGCTGGTGGAGGCCAACGTTCGCGAGCTCGCGTATGTGATACGCGCCGTGGAGGAGGCATCGCCCTCGCGGTCGAAGTCCTTACCGCCGACTTGGCGGCCGCCAAGGTTCCTGATGGAGGCGGCGTACCCGTTGCTGAGCGACTATGGGTGCAACGTGGCGTTGCCAGAGATGCAGCCAGCGAACTGGTTTTTGAGGGAGTGGTTTGAGTCAGATTTGGGAAAGTTGGAGGAAGGGTTGAGGCTGTGTGCACACATTGGGTGCGGGCGACCCGAGACTCGGCCCCATGAGTTTCGGCGGTGTTCAGTTTGCAGCAAAGTTAATTATTGTTCTCGGGGATGTCAAGCTCTTGATTGGAAATTGCGCCACAAAATGGAGTGTTCGCCCATGGAATTGTGGGTTGAAAATAATGATGGTGGTGATGTCGTTGGAGCCAATGAAGGTGAAGTAGACTTCGGAAACGATATTGTGATTCACGATGTTGTTGTTTGA 1056 0.5379 MRRPVRHSNKLDLFDGLPDDLIVLILSKLSSAASSPSDFVNVILTCRRLNRLGLHRMVLSKAGSKVFAIKPKNWSDYAHRFLKHCANAGNVDACYTLGMIRFYCLQNRGSGLSLMAKAAMKLHAPALYSLAVIQFNGSGGSKRDKDLRAGVALSARASLLGHIDALRELGHCLQDGYGVRQNVVEGRRLLVEANVRELAYVIRAVEEASPSRSKSLPPTWRPPRFLMEAAYPLLSDYGCNVALPEMQPANWFLREWFESDLGKLEEGLRLCAHIGCGRPETRPHEFRRCSVCSKVNYCSRGCQALDWKLRHKMECSPMELWVENNDGGDVVGANEGEVDFGNDIVIHDVVV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0293 351 SUPERFAMILY F-box domain 4 70 IPR036047 GO:0005515
Apr1g0293 351 PANTHER MYND DOMAIN-CONTAINING 7 335 IPR044508 -
Apr1g0293 351 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 7 335 - -
Apr1g0293 351 ProSiteProfiles Zinc finger MYND-type profile. 273 315 IPR002893 -
Apr1g0293 351 SUPERFAMILY HIT/MYND zinc finger-like 269 319 - -
Apr1g0293 351 Gene3D - 259 319 - -
Apr1g0293 351 SUPERFAMILY HCP-like 76 191 - -
Apr1g0293 351 Pfam MYND finger 276 315 IPR002893 -
Apr1g0293 351 Gene3D Tetratricopeptide repeat domain 62 214 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0293 Apr-Chr1 3443393 3445045 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0293 - - gmx:100781713 526.168