Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0286 ATGAATAATCAAGGAAAGAACGTTGCTGCATCACCCTTGTTTGGCCATTCTGGAATTGCTCCACAGCCAAACCAACCCAACACCATGAACCAACATAGAAGCCACCCTCAAACCCAATTCCAAGGTCTCTTTCAGTTTTCAGAGCCTCATTCCCAGGTGCTTGCACAAGCTCAGTATGCACAAGCACAATTGCAGTCTCAGGCTGCACGTGCTCATCAACACTTGCATAATGGGAATACTAATGCTGCTAATGTAACATCAACACCGGCCACTGGAAGCGCCAAGCGAGCAACCCAAAAGCCCCCTTTGCGGCCTCATGGTTCATCCAATGCGAACCAATCCACGCCATTTAAGACCATGGAGTTGACCCCCGCTACTCAGCGAAAGAAGAGAGAGTTCCCGGGGAAGCAAGAAAAAGTGGCTTCACTTCTGCCTGAGTCTGCTCTTTATACTCAGTTGCTTGATCTTGAGGCTCAGATGAATGCTGCTTTGGCCATGAGAAAGAATGATATACAGGAGGCTTTGAGGTTTCCCCCTCATGTTCAGAAAACTCTTCGTATTTATGTGTTTAATACCTTTTCAAATCATGCAAAATTAGATGCCGAGAATCAAAAGGCTGATGAGTCTTCTTGGTCTCTCAAGATAACTGGAAGAATATTGGAAGATGATAAGGATACTGAGTCTGGAATTTCACAGAGATCAAGTCCTTTGTACCCAAAGTTCTCTGATTTTTTCAAGAAAATTACCATATGCTTGGATCAAAGTCTTTATCCTGATAATCATGTCATTATATGGGACAGTGCTTGTTCTCCTAACCAACAGGATGGTTTTGAGGTGAAGAGAAAAGGAAGCAAAGAATTCACTGCAGTGATTAGACTAGAAATGAATTATTCACCTGAGAAGTTTATGGTTTCATCACAACTTTCTAAACTTTTAGGGATTGATGTTGAGACTCGTCCGCGAATATTAGCTGCTCTTTGGCACTACGTGAAGTCCAGGAGGCTACAGAGCCCAAATGACCCATCATTCTTCATATGTGATCCTTCTCTACAAATGTTGTTTGCGAAAGAGAGGATGGATTTCACCATGGTCTCTAAGAAGTTATCACAGCATTTGTCTCAGCCACAGCCTATACATCTGGAGCATAACATCAAGCTTTCTGGAAATTCTCCAGCTATTACTTCATGTTACGATGTACAGGTTGATGTTCCTTTTCCACTGGAGAAGGATAAGTCCGAATTCTTGGCAAGCCTTGAGAGTCAAAAAGAGATTGAAGCTCATGATGAGGTGATTTCTGCTTCCATAAAGAAGATTCAGGAGCATCGTAGAAGACGGGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAACAGAGTTTATTGATACTATGACTGCTTCTCAGAGCAAGGATCTAAAACTTGTTGCGGGAGATGCCAGCCATAATGTTGAAAAGGAACTGAGTTCTGAATTCTACAATCAACCATGGGTTGAGGATGCTGTCATTCGTTACTTGAACCGCAAAACAGCTGGAAGTGATGCTCCTGGGCGCAACTAA 1551 0.4294 MNNQGKNVAASPLFGHSGIAPQPNQPNTMNQHRSHPQTQFQGLFQFSEPHSQVLAQAQYAQAQLQSQAARAHQHLHNGNTNAANVTSTPATGSAKRATQKPPLRPHGSSNANQSTPFKTMELTPATQRKKREFPGKQEKVASLLPESALYTQLLDLEAQMNAALAMRKNDIQEALRFPPHVQKTLRIYVFNTFSNHAKLDAENQKADESSWSLKITGRILEDDKDTESGISQRSSPLYPKFSDFFKKITICLDQSLYPDNHVIIWDSACSPNQQDGFEVKRKGSKEFTAVIRLEMNYSPEKFMVSSQLSKLLGIDVETRPRILAALWHYVKSRRLQSPNDPSFFICDPSLQMLFAKERMDFTMVSKKLSQHLSQPQPIHLEHNIKLSGNSPAITSCYDVQVDVPFPLEKDKSEFLASLESQKEIEAHDEVISASIKKIQEHRRRRAFFLSFSQSPTEFIDTMTASQSKDLKLVAGDASHNVEKELSSEFYNQPWVEDAVIRYLNRKTAGSDAPGRN* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0286 516 CDD SWIB_like 304 372 - -
Apr1g0286 516 MobiDBLite consensus disorder prediction 79 95 - -
Apr1g0286 516 SMART swib_2 298 377 IPR019835 -
Apr1g0286 516 MobiDBLite consensus disorder prediction 18 36 - -
Apr1g0286 516 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 71 514 - -
Apr1g0286 516 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 71 514 - -
Apr1g0286 516 Pfam SWIB/MDM2 domain 301 372 IPR003121 -
Apr1g0286 516 MobiDBLite consensus disorder prediction 79 118 - -
Apr1g0286 516 Gene3D SWIB/MDM2 domain 294 379 IPR036885 -
Apr1g0286 516 MobiDBLite consensus disorder prediction 1 36 - -
Apr1g0286 516 MobiDBLite consensus disorder prediction 103 118 - -
Apr1g0286 516 ProSiteProfiles SWIB/MDM2 domain profile. 297 374 IPR003121 -
Apr1g0286 516 SUPERFAMILY SWIB/MDM2 domain 292 382 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0286 Apr-Chr1 3357842 3360572 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Apr1g0286 SWIB 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0286 K11650 - gmx:100784907 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0286 1 3357842 3360572 Apr1g0286 1 3357842 3360572 ECH