Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0272 ATGGCACCAACTGTACCTATAGAGTTTGCTGGACAGAAGGAATCCAGAAAGTACTCTCATTCACAAATCATGGGGAAATCTAGGAAATACTCCAAAGGTAATGCGACTGGCTTTGTTCCTGATTTCCGTCATGCTGTAGAGACTATGGGTGAATCGGAAGGTTTGGGTAGCTTGGGAAGGGTTGATACAGAGTTGACAGCATCGGCAGATTCATGTGCACCAAAGAGGAAATGCCTTGGTATGAATGCTAGTGGTTATGGTAGTTTTGATGTGCCGTATCAGCATTTCTCACTGTTGAAGATGTCGAGTTTTGAGAGAAGGGATTTGAAACTGAGGTTAACTTGGGAACTTGAGCAAGTAAGGGAATTTCAGAAGAAAATAGACAGTATAAACCCAAACATTGTTGGATTGTCTCCCTCTAGTGACATAAAGAGCTGCAGTGCTGGACAGAAGAGGCCTAAGCTGGAGAGCCAGCACAAGACGCAGGAAGTATCAGTGCCACATGGTAAGAAAAGGCCCTTGCCAGGGCATAATGGTTCCAAGACAAAGAGAAGTGTGTCTGGGCGATTTGAAAATGTGAAAGCTGCTGCACCTGTGTCTTCATATGCTGCATTGATGAAGCCCTGTGAGACATTACTGAGTCGTGTAATGTCTCACCAATTTGGTTGGGTTTTTAACACTCCTGTTGATGTTGTTAAATTGAACATTCCAGATTATTTCAATGTTATCAAGCATCCAATGGATTTGGGTACTGTGAAGAGTAGAATAACTTCTGGTGAATATTTGAATCCCATGGATTTTGCTGCCGATGTGCGGTTGACTTTCTCAAATGCGATGACTTATAATCCACCTGGTAACGATGTACACATCATGGCAGACACCCTTAGCAAATTTTTTGAAACAAGATGGAAGGCCATAGGGAAAAAAATTCCTGTCATTGATTGTGTCCCATCTGAGCCTTTAAGACCTACACGGGTGGAAATGGAAATTTCTGACAGAATTCCTCCCACAAAAAAGAAGAAGTTAACACCAAATGATGCTAAAGTGAAGCCTGAGCCTGTTAAAAGAACCATGACTGTTGAGGAGAAGCATAAATTGAGTCTAGAGTTGGAGGCAATGCTTGGAGAGCTGCCTGAAATCATTGTTGATTTCTTGAGAGAGCAAAGTTATAATGCAGGGCAAACCAATGATGATGAAATTGAGATTGATATTGATGCTCTTAGTGATGATACCTTGTTCAAACTGCGGAAGCTTCTTGATGATTATATGCTGGAGAAGCAAAGATTTCAGGCGAAAGCTCGACAGTGTGAAACAGAGCTCCTGAATGAATCAGGGTTCAGCAATTCATCAATGCAACCATGTAAAGGCAACGAACATGTTGAGGAGGATGTGGACATTGTTGGTGGGAATGATCCTCCTATTTCGAATTATCCTCCATTAGAGATTGAAAAAGATGGTACCAATAGAAATAGTAAATGCAGTAGTTCAAGTAGCTCCAGCAGTGAATCTGGCTCTTCATCCAGTGATTCAGACTCAGGTAGTTCATCTGGTAGTGAGTTGGATGTGGCTAAAGCATCAGAACCTCTTAGTGCTACCAAGGAAAATGTTGGATCTGGCTTGACTGAAGATCAAAACAAAGGGGATCCTGGCAATTCTGAAACTGGAAAGGATTCAACAAATATGGGCGGCCAAGTTGAGCAGAGTTCCCAGACTAAGCATGTTGCTATTGAGACAGAAAGCCATCAAGAGGGGGAGAGTGCTGCACCTAAGAGGCAAGTCTCTCCCGAAAAGCTCTACCGTGCAGCTTTATTAAGGAGCCGGTTTGCTGACACCATACTTAAAGCTCAAGAGAAAGCCCTTGAAAAGGATGAAAAGCGGGACCCTGAAAAACTTAGGATAGAGCGGGAAGATCTTGAAAGGAGGCAGAAGGAAGAGAAAGCTCGATTGCAGGCAGAGGCAAAGGCTGCAGAGGAGGCTCGGAGGAAAGCTGAAGCAGAAGCTGCAGCTGAAGCCAAAAGGAAGAGGGAACTGGAAAGAGAAGCTGCTCGTCAAGCTTTGCAGCAGATGGAGAAAACTGTTGATATCAACGAGGGCAGTCAATTTTTGGAAGATCTAGAGATGCTGAGTGCTGTGCATGATGAACGTATGCTAAGTTTCAAAGAGGAGACAAGCCCAGATCATCCTCAAAATGGATTGGGTAGGATCAAGCTACAGGGAAATCCCTTAGAACAGCTAGGATTGTACATGAAGGCTGATGATGAGGATGAGGAAGAACTGCCTCAGAGTGGTGCTGCTGGGCCATCAAATGATGTGGAAGAAGGAGAAATTGATTGA 2334 0.4366 MAPTVPIEFAGQKESRKYSHSQIMGKSRKYSKGNATGFVPDFRHAVETMGESEGLGSLGRVDTELTASADSCAPKRKCLGMNASGYGSFDVPYQHFSLLKMSSFERRDLKLRLTWELEQVREFQKKIDSINPNIVGLSPSSDIKSCSAGQKRPKLESQHKTQEVSVPHGKKRPLPGHNGSKTKRSVSGRFENVKAAAPVSSYAALMKPCETLLSRVMSHQFGWVFNTPVDVVKLNIPDYFNVIKHPMDLGTVKSRITSGEYLNPMDFAADVRLTFSNAMTYNPPGNDVHIMADTLSKFFETRWKAIGKKIPVIDCVPSEPLRPTRVEMEISDRIPPTKKKKLTPNDAKVKPEPVKRTMTVEEKHKLSLELEAMLGELPEIIVDFLREQSYNAGQTNDDEIEIDIDALSDDTLFKLRKLLDDYMLEKQRFQAKARQCETELLNESGFSNSSMQPCKGNEHVEEDVDIVGGNDPPISNYPPLEIEKDGTNRNSKCSSSSSSSSESGSSSSDSDSGSSSGSELDVAKASEPLSATKENVGSGLTEDQNKGDPGNSETGKDSTNMGGQVEQSSQTKHVAIETESHQEGESAAPKRQVSPEKLYRAALLRSRFADTILKAQEKALEKDEKRDPEKLRIEREDLERRQKEEKARLQAEAKAAEEARRKAEAEAAAEAKRKRELEREAARQALQQMEKTVDINEGSQFLEDLEMLSAVHDERMLSFKEETSPDHPQNGLGRIKLQGNPLEQLGLYMKADDEDEEELPQSGAAGPSNDVEEGEID* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0272 777 Coils Coil 419 439 - -
Apr1g0272 777 Gene3D - 351 430 IPR038336 -
Apr1g0272 777 PANTHER TRANSCRIPTION FACTOR GTE10 25 758 - -
Apr1g0272 777 MobiDBLite consensus disorder prediction 618 695 - -
Apr1g0272 777 PANTHER TRANSCRIPTION FACTOR GTE8 25 758 - -
Apr1g0272 777 MobiDBLite consensus disorder prediction 153 167 - -
Apr1g0272 777 MobiDBLite consensus disorder prediction 716 777 - -
Apr1g0272 777 PRINTS Bromodomain signature 220 233 IPR001487 GO:0005515
Apr1g0272 777 PRINTS Bromodomain signature 236 252 IPR001487 GO:0005515
Apr1g0272 777 PRINTS Bromodomain signature 252 270 IPR001487 GO:0005515
Apr1g0272 777 PRINTS Bromodomain signature 270 289 IPR001487 GO:0005515
Apr1g0272 777 SMART bromo_6 198 308 IPR001487 GO:0005515
Apr1g0272 777 MobiDBLite consensus disorder prediction 618 685 - -
Apr1g0272 777 MobiDBLite consensus disorder prediction 531 575 - -
Apr1g0272 777 Gene3D - 184 312 IPR036427 GO:0005515
Apr1g0272 777 ProSiteProfiles Bromodomain profile. 217 289 IPR001487 GO:0005515
Apr1g0272 777 ProSiteProfiles NET domain profile. 348 430 IPR027353 -
Apr1g0272 777 Pfam Bromodomain extra-terminal - transcription regulation 358 420 IPR027353 -
Apr1g0272 777 Coils Coil 635 692 - -
Apr1g0272 777 SUPERFAMILY Bromodomain 186 311 IPR036427 GO:0005515
Apr1g0272 777 MobiDBLite consensus disorder prediction 464 594 - -
Apr1g0272 777 MobiDBLite consensus disorder prediction 141 189 - -
Apr1g0272 777 MobiDBLite consensus disorder prediction 489 521 - -
Apr1g0272 777 CDD Bromo_plant1 205 303 IPR037377 -
Apr1g0272 777 Pfam Bromodomain 209 293 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0272 Apr-Chr1 3139486 3144379 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0272 - - gmx:100776368 1192.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0272 1 3139486 3144379 Apr1g0272 1 3139486 3144379 ECH