Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0246 ATGAGTGGCCACGCTCGCGCGTTACCGGCCATCCCTGCGAAGATGCAGCCAAGGAAGGAGCGACGCATGTTCTCTACATCTGATGATAGTGCCATGATGAAGCAAGTTCAAGCCACTCATGCTCCTGATGGTCGTGAAATTGATGTCAAACCCATTCTCCAAATCGTTGATGAAATATTGATTCAATTCATTGCCCGAAGTGTTGAGGGTCATGAGGTTAAACGAGACCAAGACACATTGGAGATGTCTGCTGCTCTGGCTGAATATGACATGCTTGACTCGCTGGCTTTTATCATAAACAAAATTTCGTGCGAGCTATCTTGCAAGTGCTCAGGAGGTGGAGATGCACATGCATCAACAATGGTGTTACTGAATTACCTGTCAAGCTATGCATGGCATGCAAAAGTTGTGTTAACCTTAGCAGCCTTTGCTGTTATTTTTGGAGAGTTTTGGCTTGTTGCTCAGTCAAGTGTTGAAAATACACTTGCCAAGTCTGTGGCCCTCCTCAAGCAACTCCCTGACATTATAGAGAATTCTTCATCCTATAAACCCCATTTTGATGCACTCATCAAGCTTGTGAAGGCAGCACTGGATGTAACCATGTGCATTGTAGAATTCAAGGAGCTACCATCTGCATATATTTCTGAGGACACACCTCCTATGTCTGTTGCCAGTACTCACATTCCTATTGCTGCCTATTGGGTCATCCGAAGCATTGTGGCTTGTTCCTCACAAATTAGTAGTCTCATAGGCATGAGAAATGAGTCCATTTCATCAGCCTCAGAGGCGTGGGAATTGTCTAGTTTGGCTCACAAAGTCCACAGTATATATGAGCACCTCAAAACCCAACTGGCTCTTTGTTACCAATATATAGATGAAAAGAGGCATATGGAGGCCTTCCATAATCTGATACATCTTTTTGAGTCGGTCCATATTGACAACATGAAAATTATCAGAGCTTTGATATATGGAAAGGATGATATTCTTCCACTTTTTGATGGAACTGCAAAATCAAGGGTTAGTGTAGAGGTACTAAGGAGGAAACATGTGCTGCTGCTCATATCAGATCTTGATATTTCACAAGAAGAGATTCTGGTGCTTGATAATTTGTTCAAAGATGCACGGGCGAGGGGTGAGACTCACTATGAGATGGTATGGATCCCAGTTGTGGACAAAGCCACCTGGAATGAAGTGAATAGACAGAAGTTTGAGTATTTGCAATCATTGATGGTATGGTACAGTGTTGTTGATCCTTTCATCATTGAACCATCAGTGATAAAGTATATTAAAGAAGTGTGGAGTTTCTCAAAGAGACCAATTCTTGTGGCCCTTGATCCACAAGGAAGATTATCTTCCTCAAATGCTCTCCACATGATATGGATTTGGGGAAATTTGGCCTTCCCCTTTACAAGTGATAAAGAAGAATCCTTGTGGAAGAACGAGATTTGGAGCCTTGAGCTGCTTGTTGATGGCATTGATCCAACAGTTTTGGAATGGATGACAGATGGAAAATGCATATGCCTGTATGGAGGTGAAGATCTTGAATGGATTGAAAAGTTCACAACCACTGCATTGAGTGTTGCAAAAGCTGGTAGGTTCCAATTGGAGATGGTATACGTGGGAAAGAGCAACGCCAAAGAGAGGATGCAGAGAATGATCCAAACCTTCGTCACAAGAAAGTTCAGCTACTTTTGGCCTAATGTCACATCCATTTGGTTCTTCTGGGCAAGGTTGGAGAGCATGTTGTACTCAAAGTTGCAGCATGGAAAGAGCGTTGAAAATGACGAAATCATGAGTGAAGTGATGACTGTGCTTAGCTTTGATGGTAGTGATAGAGGGTGGGCAATATTCTGTAGGGGCGCAAACGAAATGGCTAGAGCCAAAGGTGACACTGCTCTATCATGTTTGAGAGACTTTGATAAGTGGAAGGATAGGTCTGACCAAGAGGGTTTTGTGCCAGCAATGAATGATTACCTTAAGGAAATTACCACCCCGCATCATTGCAATCGCCTCATTCTTCCTGGGAGCACTGGTGGCATACCACAGAGGGTTGTGTGTGCTGAATGTGGCCGTCAAATGGAGAAGTACTTCATGTACCGTTGTTGTGTGGAGTAA 2115 0.4336 MSGHARALPAIPAKMQPRKERRMFSTSDDSAMMKQVQATHAPDGREIDVKPILQIVDEILIQFIARSVEGHEVKRDQDTLEMSAALAEYDMLDSLAFIINKISCELSCKCSGGGDAHASTMVLLNYLSSYAWHAKVVLTLAAFAVIFGEFWLVAQSSVENTLAKSVALLKQLPDIIENSSSYKPHFDALIKLVKAALDVTMCIVEFKELPSAYISEDTPPMSVASTHIPIAAYWVIRSIVACSSQISSLIGMRNESISSASEAWELSSLAHKVHSIYEHLKTQLALCYQYIDEKRHMEAFHNLIHLFESVHIDNMKIIRALIYGKDDILPLFDGTAKSRVSVEVLRRKHVLLLISDLDISQEEILVLDNLFKDARARGETHYEMVWIPVVDKATWNEVNRQKFEYLQSLMVWYSVVDPFIIEPSVIKYIKEVWSFSKRPILVALDPQGRLSSSNALHMIWIWGNLAFPFTSDKEESLWKNEIWSLELLVDGIDPTVLEWMTDGKCICLYGGEDLEWIEKFTTTALSVAKAGRFQLEMVYVGKSNAKERMQRMIQTFVTRKFSYFWPNVTSIWFFWARLESMLYSKLQHGKSVENDEIMSEVMTVLSFDGSDRGWAIFCRGANEMARAKGDTALSCLRDFDKWKDRSDQEGFVPAMNDYLKEITTPHHCNRLILPGSTGGIPQRVVCAECGRQMEKYFMYRCCVE* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0246 704 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 14 703 IPR039299 GO:0010088
Apr1g0246 704 Pfam Sieve element occlusion N-terminus 27 311 IPR027942 -
Apr1g0246 704 Pfam Sieve element occlusion C-terminus 473 702 IPR027944 -
Apr1g0246 704 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 14 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0246 Apr-Chr1 2679216 2683320 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0246 - - gmx:100811452 1242.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0246 1 2679216 2683320 Apr1g0246 1 2679216 2683320 ECH