Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0240 ATGGGTGGATCAATTTCAAAAAGGAGGAGTTCAAGGCAACGTTCATCCTCGAGGTTTTTTCCGCAGTATCAATCACCTTATTTGCCACAAAGCCAAGATCATGGGTCTGTGAGTCATTATGGGCATTCATCTCAAGGCTATGGTGGTGGTCATGCTCCAGAGCAAGGAAAAGGGTCAGATAGGAAGTTTTCAAGGATAGGTGATAATTATAATAGCTTGGACCAGGTAACTGACGCTCTTGCAAGTGCTGGCCTAGAGTCTTCCAATCTCATTGTTGGTATTGATTTTACAAAGAGCAATGAGTGGACAGGTGGAAGGTCATTTCAAAGGAGATGTCTGCATCATATTGGTCATGAACAAAATCCATATGAACAAGCTATATCTATCATTGGCAAAACATTATCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGTTTTGGAGACGCTTCAACACATGACCAGGAAGTATTTAGTTTCTATTCTGATGAGAGATTTTGTCAAGGATTTGAAGAAGTGTTGGCACGGTACAGAGAATTGGTCCCTCAATTAAAGCTTGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTGGAGCAAAGTGGAGGCCAATACCATGTCTTACTGATTATAGCAGATGGGCAGGTGACAAGGAGTGTTGACACCGCAAACGGGCAGTTGAGTGCTCAAGAAAAGAATACTGTAGAAGCTATTGTGAAAGCTAGTGAATATCCCTTGTCAATAATATTAGTTGGAGTTGGAGATGGGCCGTGGGATATGATGAAAGAATTTGATGATAACATCCCTGCCCGTGTATTTGATAATTTCCAGTTTGTGAATTTCACAGAAATAATGTCAAAGAACATGGATCGATCCAGAAAGGAAGCAGAGTTTGCACTTGCTGCCTTGATGGAGATACCCTCCCAATATAAGGCAACTCTTGAGCTTAATCTATTGGGTGCTCATAGAGGGAAAGCTATAGACAGGATTCCTCTACCACCACCCCTTTATGGTGCAGCACCTTTCAACTCCCCAAAAACTTCACGTCAAAACAGTTTTCGTCCCAGTGCACCATCTCACAGACATGATGTTAGCGCAAATCCTCCAGCAACTTCTGCTTCTGATAATCAGTTTTGTCCCATTTGCCTCTCCAATCCTAAGGATATGGCCTTTGGTTGCGGGCATCAGACATGCTGTGAATGTGGACAAGATCTTGAGTTGTGCCCCATTTGCAGAAGTACCATTGATACTAGAATAAAGCTTTATTAG 1287 0.4235 MGGSISKRRSSRQRSSSRFFPQYQSPYLPQSQDHGSVSHYGHSSQGYGGGHAPEQGKGSDRKFSRIGDNYNSLDQVTDALASAGLESSNLIVGIDFTKSNEWTGGRSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYSDERFCQGFEEVLARYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLLIIADGQVTRSVDTANGQLSAQEKNTVEAIVKASEYPLSIILVGVGDGPWDMMKEFDDNIPARVFDNFQFVNFTEIMSKNMDRSRKEAEFALAALMEIPSQYKATLELNLLGAHRGKAIDRIPLPPPLYGAAPFNSPKTSRQNSFRPSAPSHRHDVSANPPATSASDNQFCPICLSNPKDMAFGCGHQTCCECGQDLELCPICRSTIDTRIKLY* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0240 428 MobiDBLite consensus disorder prediction 347 379 - -
Apr1g0240 428 ProSiteProfiles Zinc finger RING-type profile. 385 418 IPR001841 -
Apr1g0240 428 PANTHER RING-FINGER PROTEIN 1 428 - -
Apr1g0240 428 MobiDBLite consensus disorder prediction 1 43 - -
Apr1g0240 428 Pfam Copine 112 325 IPR010734 -
Apr1g0240 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 428 IPR013083 -
Apr1g0240 428 SUPERFAMILY RING/U-box 376 423 - -
Apr1g0240 428 Pfam Zinc finger, C3HC4 type (RING finger) 382 423 - -
Apr1g0240 428 SMART VWA_4 87 290 IPR002035 -
Apr1g0240 428 MobiDBLite consensus disorder prediction 349 364 - -
Apr1g0240 428 PANTHER COPINE FAMILY PROTEIN 1 1 428 - -
Apr1g0240 428 SUPERFAMILY vWA-like 88 271 IPR036465 -
Apr1g0240 428 CDD RING-HC_RGLG_plant 385 428 IPR045317 GO:0061630|GO:0070534
Apr1g0240 428 MobiDBLite consensus disorder prediction 1 66 - -
Apr1g0240 428 CDD vWA_copine_like 66 316 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0240 Apr-Chr1 2621132 2624829 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0240 K16280 - gmx:100809850 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0240 1 2621132 2624829 Apr1g0240 1 2621132 2624829 ECH