Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0202 ATGTGGCCTAATTTGATTACCAAAGCTAAAGAAGGGGGATTAGATGTCATACAAACTTACGTGTTTTGGAACCTTCACGAACCTCAGCAAGGCCAGTACGACTTTAGTGGAAGGCGCGATATAGTGAGATTCATTAAGGAAGTTCAAGCTCAGGGTTTGTATGCGACCCTCCGAGTTGGACCATACATTGAGAGTGAATGCACTTACGGGGGTCTACCAATATGGTTACATGATATTCCGGGAATTGTTTTTAGATCTGATGATGAGCAATTCAAGTTCCACATGCAAAGGTTCACTGCCAAAATAGTCAATATGATGAAATCAGCCAGTCTTTATGCTTCACAAGGAGGACCGATCATACTATCTCAGATTGAGAACGAATATGGCAATGTTGAAGGGGCGTTTCACGAGAATGGACTGTCCTATGTTCGTTGGTCTGCCCAAATGGCTGTGGGACTCCAAACTGGCGTGCCTTGGGTAATGTGCAAGCAAGATAATGCTCCTGATCCAGTGATCAACACATGCAATGGTATGCAGTGTGGGAAAACTTTTATGGGGCCTAACTCTCGTAACAAGCCTTCACTATGGACAGAGAATTGGACAAGTTTTTACCAAGTCTTCGGTGGAGTACCATACATAAGATCAGCTGAAAACATCGCGTACAATGTTGCCCTGTTCATTGCAAAGAACGGAAGCTACGTCAATTACTACATGTACCATGGAGGAACCAATTTGGACAGGATAGCCTCTGCTTTCGTGACAACGGCTTATTATGATGAAGCTCCGTTGGATGAATATGGTTTGGTTAGGCAACCGAAATGGGGGCATCTAAAGGAGCTACATGCGACAATCAAGTCATGTTCAACATCACTACTTTATGGAACCAAAACTGCGTTCAGCTTGGGCTTACAACAAGAAGCTTATATTTTCAAAAGGAGCTCAACAGAATGTGCTGCCTTCCTGGAAAATAGTGAAGATCGGATTGTTACAATCCAATTTCAAAATATTCCATATCAGTTACCCCCCAAATCAATCAGTATCCTACCAGACTGCAAGAATGTAGCCTTCAACACCGCCAAGGTAAGCACACAAAACAATGCCAGAGAAATGAAATCACAGTTAGAGTTCAATTCAGCTGAAAAATGGAAAGTCTACAAAGAAGCCATCCCCAACTTTGATGATACTTCATTAAGAGCAAATAAACTACTAGATCAAATCAGCACAGCAAAAGATGGATCTGACTACATGTGGTACACATTCAGGTTTTATGACAACTCTCCTAATGCTCAATCTGTTCTTAGTGCATACAGCCAAGGACATGTTTTGCATGTCTTCACCAATGGAGTTTTAGTAGGTTCTGCACATGGAAGTCACAGAAATGCATCTTTCATCATGGAGAACAAACTCAATCTTATAAATGGGATGAACAATATTTCTTTCCTCAGTGCAACAGTCGGATTGCCGAACTCAGGAGCATATCTAGAGCGCAGAGTAGCTGGTTTGTATAGAGTGAAAGTTCAAGGCAGAGATTTCACAAATCAAGCATGGGGATATCAGGTTGGATTGTTAGGAGAAAAATTGCAAGTCTATACAGCTAGTGGATCAAGTAAAGTTCAGTGGGAAAGTTTTCAAAGCTCTACTAAACCACTGACATGGTATCAGACCACATTTGATGCACCAGTGGGAAATGATCCTGTGGTGCTGAACCTTGGTTCTATGGGAAAGGGATTTGCTTGGGTTAATGGCCAAGGTATTGGCCGATATTGGGTGTCTTTCCACACACCACAGGGAACTCCTTCACAGAAATGGTATCACATACCTAGGTCCTTCCTAAAATCTACTGGGAACCTGCTAGTTCTACTAGAAGAAGATACTGGAAACCCATTAGGGATCACTCTAGACACAGTCCACATTACAGGGAAAGATAGCACGTCATGA 1938 0.4231 MWPNLITKAKEGGLDVIQTYVFWNLHEPQQGQYDFSGRRDIVRFIKEVQAQGLYATLRVGPYIESECTYGGLPIWLHDIPGIVFRSDDEQFKFHMQRFTAKIVNMMKSASLYASQGGPIILSQIENEYGNVEGAFHENGLSYVRWSAQMAVGLQTGVPWVMCKQDNAPDPVINTCNGMQCGKTFMGPNSRNKPSLWTENWTSFYQVFGGVPYIRSAENIAYNVALFIAKNGSYVNYYMYHGGTNLDRIASAFVTTAYYDEAPLDEYGLVRQPKWGHLKELHATIKSCSTSLLYGTKTAFSLGLQQEAYIFKRSSTECAAFLENSEDRIVTIQFQNIPYQLPPKSISILPDCKNVAFNTAKVSTQNNAREMKSQLEFNSAEKWKVYKEAIPNFDDTSLRANKLLDQISTAKDGSDYMWYTFRFYDNSPNAQSVLSAYSQGHVLHVFTNGVLVGSAHGSHRNASFIMENKLNLINGMNNISFLSATVGLPNSGAYLERRVAGLYRVKVQGRDFTNQAWGYQVGLLGEKLQVYTASGSSKVQWESFQSSTKPLTWYQTTFDAPVGNDPVVLNLGSMGKGFAWVNGQGIGRYWVSFHTPQGTPSQKWYHIPRSFLKSTGNLLVLLEEDTGNPLGITLDTVHITGKDSTS* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0202 645 Gene3D Glycosidases 1 288 - -
Apr1g0202 645 SUPERFAMILY Galactose-binding domain-like 515 638 IPR008979 -
Apr1g0202 645 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 116 128 IPR019801 GO:0004553|GO:0005975
Apr1g0202 645 SUPERFAMILY Galactose-binding domain-like 345 503 IPR008979 -
Apr1g0202 645 Gene3D - 516 642 - -
Apr1g0202 645 Pfam Glycosyl hydrolases family 35 1 283 IPR031330 -
Apr1g0202 645 PANTHER BETA-GALACTOSIDASE 2 639 - -
Apr1g0202 645 SUPERFAMILY (Trans)glycosidases 1 287 IPR017853 -
Apr1g0202 645 Pfam Beta-sandwich domain in beta galactosidase 291 361 IPR041392 -
Apr1g0202 645 PRINTS Glycosyl hydrolase family 35 signature 2 20 IPR001944 GO:0004553|GO:0005975
Apr1g0202 645 PRINTS Glycosyl hydrolase family 35 signature 57 76 IPR001944 GO:0004553|GO:0005975
Apr1g0202 645 PRINTS Glycosyl hydrolase family 35 signature 114 129 IPR001944 GO:0004553|GO:0005975
Apr1g0202 645 PRINTS Glycosyl hydrolase family 35 signature 195 210 IPR001944 GO:0004553|GO:0005975
Apr1g0202 645 PRINTS Glycosyl hydrolase family 35 signature 232 247 IPR001944 GO:0004553|GO:0005975
Apr1g0202 645 PRINTS Glycosyl hydrolase family 35 signature 251 267 IPR001944 GO:0004553|GO:0005975
Apr1g0202 645 PRINTS Glycosyl hydrolase family 35 signature 548 562 IPR001944 GO:0004553|GO:0005975
Apr1g0202 645 PRINTS Glycosyl hydrolase family 35 signature 575 591 IPR001944 GO:0004553|GO:0005975
Apr1g0202 645 PANTHER BETA-GALACTOSIDASE RELATED 2 639 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0202 Apr-Chr1 2234078 2239170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0202 1 640 Glycoside Hydrolase AT5G63800 59.105 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0202 - - gmx:100789220 1195.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0202 1 2234078 2239170 Apr1g0202 1 2234078 2239170 ECH