Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0199 ATGAAAATCCCAAACCCTGTCTTCTCCTCTTCGATCGTCTTCTTATTAATCGCTCTCCGAGACTCGCCGTTTTCACTCGCCGAGCACATACCTTCCGCTGCTTACGACGGCGTTTTGTTCGCCGACCGGATATGCTACAACCGGGAGAACAACGACGCTGTCTCTCCGTGCAAAAACAAGACGCAGCGAGGCGCACCGGCACCGGTGGACTGCGAGGTGTGGAGCGAGGCGTGTTCGGAGGCGGTGCTGAGCGTGGCGCGGTTCCCGGAGACGGTGGAGTGGTTGAAACGGATTCGGAGAAAGATCCACGAGAATCCGGAACTGGCTTTTGAGGAAACCGAGACGAGCCGTTTGATACGAGAGGAGTTGGATCTGATGGAAGTTAGTTATCGGTATCCACTCGCGAAGACCGGTATTCGAGCCTGGATCGGAACTGGAGCTCCTCCTTTTGTTGCGATCAGAGCTGACATGGATGCACTTCCCATCCAGGAAGCTGCGGAATGTGAGTACAAGTCGAAAGTTCCCGGCAAAATGCACGCTTGTGGGCACGACGCCCATGTGGCTATGCTTATTGGCGCTGCCAAGATCTTGAAAACTCGAGAGCATTTATTAAAGGGAACTGTAATTCTGTTATTCCAGCCAGCAGAGGAAGCTGGTAATGGTGCAAAACGAATGATGCAAGATGGTGCTTTGGAGGACGTGGAGGCTATATTTGCAGTTCATGTATCCCATGAACATCCAACTGGTATAATTGGGTCGAGGCCTGGACCCCTCCTTGCTGGCTGTGGATTTTTCAGAGCTGTGATTAGTGGCAAAAAAGCCCTTGCTGGCAATCCTCACCATTCTGTTGATCCAGTTTTGGCCGCTTCAGCTGCAGTTATCAGCTTACAGGGCATTGTCTCGCGCGAATCAAATCCATTGGATTCACAGGTTGTCTCTGTAACTTCATTTAATGGAGGCAACAATCTTGACATGATACCGGATACAGTGGTTCTCGGTGGGACTTTCAGAGCGTTCTCTAATACCAGTTTTTACCAAGTTCTTGAAAGAATAGAGCAGGTGATTGTGGAACAGGCCAGTGTCTACAGATGTTCCGCAGAAGTTGACTTCTTTGAAAAGGAGTACACGATTTATCCTCCCACAGTTAATGATGATAAAATGTATGAGCATGTGAAGAAGGTGTCAATTGATTTGCTTGGTCAGAAGAATTTCAGGGTAGTTCCACCTATGATGGGTGCTGAAGATTTCTCTTTTTACTCCGAGGTGGTTCCCTCAGCTTTCTTCTATATAGGGATAAGGAACGAAACACTGGGGTCTACTCACACGGGACACTCCCCGTATTTCATGATTGATGAAGACGTTCTACCAATAGGTGCTGCTGCTCATGCCACTATTGCCGAGAGGTACCTCATTGAACATGGCTGA 1425 0.4912 MKIPNPVFSSSIVFLLIALRDSPFSLAEHIPSAAYDGVLFADRICYNRENNDAVSPCKNKTQRGAPAPVDCEVWSEACSEAVLSVARFPETVEWLKRIRRKIHENPELAFEETETSRLIREELDLMEVSYRYPLAKTGIRAWIGTGAPPFVAIRADMDALPIQEAAECEYKSKVPGKMHACGHDAHVAMLIGAAKILKTREHLLKGTVILLFQPAEEAGNGAKRMMQDGALEDVEAIFAVHVSHEHPTGIIGSRPGPLLAGCGFFRAVISGKKALAGNPHHSVDPVLAASAAVISLQGIVSRESNPLDSQVVSVTSFNGGNNLDMIPDTVVLGGTFRAFSNTSFYQVLERIEQVIVEQASVYRCSAEVDFFEKEYTIYPPTVNDDKMYEHVKKVSIDLLGQKNFRVVPPMMGAEDFSFYSEVVPSAFFYIGIRNETLGSTHTGHSPYFMIDEDVLPIGAAAHATIAERYLIEHG* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0199 474 Gene3D - 260 379 - -
Apr1g0199 474 SUPERFAMILY Bacterial exopeptidase dimerisation domain 261 370 IPR036264 -
Apr1g0199 474 PANTHER PEPTIDASE M20 FAMILY MEMBER 53 473 IPR017439 GO:0016787
Apr1g0199 474 CDD M20_IAA_Hyd 95 470 IPR044757 GO:0009850|GO:0016787
Apr1g0199 474 PIRSF Amidohydrol_AmhX 84 473 IPR017439 GO:0016787
Apr1g0199 474 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 6 53 473 - -
Apr1g0199 474 Pfam Peptidase family M20/M25/M40 152 467 IPR002933 GO:0016787
Apr1g0199 474 SUPERFAMILY Zn-dependent exopeptidases 89 472 - -
Apr1g0199 474 Gene3D Zn peptidases 97 463 - -
Apr1g0199 474 Pfam Peptidase dimerisation domain 265 359 IPR011650 -
Apr1g0199 474 TIGRFAM amidohydrolases: amidohydrolase 97 458 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0199 Apr-Chr1 2187977 2194726 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0199 K21604 K14664 gmx:100785666 786.949