Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0196 ATGGCGAGTAGGGTTTCGATTTGCTTCCTCTTCGTTTTCGCTTTCTCTCTCCTTTTGCTGTTTCCTTCTCAGATCTCGGCTGATGAATCGGAGTCCAAGGAATTCGTGCTCACATTGGATCACTCCAATTTCTCCGACACTGTCAGCAAGCACAATTTCATCGTCGTCGAGTTCTACGCACCTTGGTGTGGCCACTGTAAGAAGCTTGCTCCGGAGTTTGAAAAGGCTGCTTCTATCTTGAGTAGTCATGATCCTCCGGTTGTTTTGGCTAAAATTGATGCCAATGATGAGAAGAACAGAGACCTTACATCACAATATGAAGTTAGAGGATACCCGACCCTTAAGATTATGAGAAATGGGGGAAAGAATGTTCAAGAATACAAAGGTCCCCGTGAAGCAGATGGCATTGTTGACTATTTGAAGAAACAAAGTGGTCCTGCTTCATCTGAAATTAAATCTGCTGATGATGCTGCTGCTCTTATTGGTGTAAATAAAGTTGCTATTGTTGGAGTTTTTCCTAAATTTTCTGGGGAGGAGTTTAATAACTTTACCGCCTTAGCAGAGAAGTTCCGTGCTGATTATGACTTTGGTCACACTCTGGATGCCAAACACCTTCCAAGAGGAGAATCATCAGTGACTGGGCCCTTGGTTAGGTTATTCAAGCCATTTGACGAACTTTTTGTTGATTTCCAGATTTTCCATGTGGATGCTCTGGAGAAATTTGTTGAAGAATCTAGCGTCCCTGTTGTAACTTTCTTCAACAATGATCCAAGCAATCACCCTTTTGTTGTCAAATTCTTCAACAGCCCCCTTGCAAAGGCAATGTTGTTTATCAACTTCACTGCTGAAGGTGCTGAATCTTTCAAATCAAAGTATCATGAAGCTGCTGAGCAATTTAGACAACATGGCGTAAACTTTCTCCTGGGAGATGTTGAGGCTAGTCAAGGTGCTTTCCAGTATTTTGGACTGAAGGAAGAACAAGTACCTCTAATTATCATACAACATAACGATGGGAAGAAATTTTTTAAACCCAATTTGGAACCTGAAAACATTTCAACTTGGTTGAAGGCATACAAGGATGGAAATATTGCACCATATGTGAAGTCTGAACCTATTCCCGAAACCAACAATGAACCTGTTAAAGTGGTAGTTGGGGACAATCTGCAGGAGATTGTTTTCAACTCTGGGAAAAATGTTTTGCTGGAGTTTTATGCTCCTTGGTGTGGTCATTGCAAACAGTTGGCTCCAATATTGGAGGAAGTTGCTGTCTCATATCAAAGTGATGCTGATGTTGTTATTGCAAAACTGGATGCGACTGCCAATGATATCCCAAGTGAAACCTTTGATGTCCAAGGTTATCCAACTCTGTACTTCAGGTCAGCAAGTGGAAAGCTATCACAATATGATGGTAACAGGACCAAGGAAGACATTATAGAATTCATTGAAAAGAACCGGGATAAACCTGCTCAACAAGAACAAGGAAAAGATGAGCAAGAAAAAGGAAAGGATGAGCTTTGA 1518 0.413 MASRVSICFLFVFAFSLLLLFPSQISADESESKEFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEFEKAASILSSHDPPVVLAKIDANDEKNRDLTSQYEVRGYPTLKIMRNGGKNVQEYKGPREADGIVDYLKKQSGPASSEIKSADDAAALIGVNKVAIVGVFPKFSGEEFNNFTALAEKFRADYDFGHTLDAKHLPRGESSVTGPLVRLFKPFDELFVDFQIFHVDALEKFVEESSVPVVTFFNNDPSNHPFVVKFFNSPLAKAMLFINFTAEGAESFKSKYHEAAEQFRQHGVNFLLGDVEASQGAFQYFGLKEEQVPLIIIQHNDGKKFFKPNLEPENISTWLKAYKDGNIAPYVKSEPIPETNNEPVKVVVGDNLQEIVFNSGKNVLLEFYAPWCGHCKQLAPILEEVAVSYQSDADVVIAKLDATANDIPSETFDVQGYPTLYFRSASGKLSQYDGNRTKEDIIEFIEKNRDKPAQQEQGKDEQEKGKDEL* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0196 505 ProSiteProfiles Thioredoxin domain profile. 358 486 IPR013766 -
Apr1g0196 505 CDD PDI_b_family 148 244 - -
Apr1g0196 505 ProSitePatterns Thioredoxin family active site. 55 73 IPR017937 -
Apr1g0196 505 TIGRFAM pdi_dom: protein disulfide-isomerase domain 40 143 IPR005788 GO:0003756
Apr1g0196 505 TIGRFAM pdi_dom: protein disulfide-isomerase domain 384 484 IPR005788 GO:0003756
Apr1g0196 505 Gene3D Glutaredoxin 250 367 - -
Apr1g0196 505 SUPERFAMILY Thioredoxin-like 149 248 IPR036249 -
Apr1g0196 505 PRINTS Thioredoxin family signature 54 62 - -
Apr1g0196 505 PRINTS Thioredoxin family signature 62 71 - -
Apr1g0196 505 PRINTS Thioredoxin family signature 107 118 - -
Apr1g0196 505 ProSiteProfiles Thioredoxin domain profile. 15 145 IPR013766 -
Apr1g0196 505 CDD PDI_a_family 37 140 - -
Apr1g0196 505 CDD PDI_b'_family 263 359 - -
Apr1g0196 505 Gene3D Glutaredoxin 144 249 - -
Apr1g0196 505 PANTHER PROTEIN DISULFIDE-ISOMERASE 13 498 - -
Apr1g0196 505 TIGRFAM ER_PDI_fam: protein disulfide isomerase 36 505 IPR005792 GO:0003756
Apr1g0196 505 ProSitePatterns Thioredoxin family active site. 400 418 IPR017937 -
Apr1g0196 505 Gene3D Glutaredoxin 368 504 - -
Apr1g0196 505 SUPERFAMILY Thioredoxin-like 346 485 IPR036249 -
Apr1g0196 505 Pfam Thioredoxin-like domain 172 356 - -
Apr1g0196 505 CDD PDI_a_PDI_a'_C 379 481 - -
Apr1g0196 505 SUPERFAMILY Thioredoxin-like 246 377 IPR036249 -
Apr1g0196 505 SUPERFAMILY Thioredoxin-like 36 146 IPR036249 -
Apr1g0196 505 Gene3D Glutaredoxin 22 143 - -
Apr1g0196 505 MobiDBLite consensus disorder prediction 482 505 - -
Apr1g0196 505 Pfam Thioredoxin 380 483 IPR013766 -
Apr1g0196 505 Pfam Thioredoxin 36 142 IPR013766 -
Apr1g0196 505 PANTHER PROTEIN DISULFIDE ISOMERASE 13 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0196 Apr-Chr1 2153480 2157776 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0196 K09580 - gmx:100170705 862.062