Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0185 ATGAACGCCATAGCTACTGCTGCAGTTCTCTCTCTCCCATTCTCGTTCTGTAAATCATCCAAGCTTGACGCCAGAAAGGGTTTGAAAGGTCGATTTAGAGTGTTTGCTGTGTATGGAGAGGAGATAGATAAGAAGAATGCATGGAGTGCGCTGTTTGACGTAGAGGATCCAAGATCTAAAGTCCCACAGTATAAAGGAAAGTTTTTGGATATATATCAAGCCTTAGAAGTGGCAAGATACGATATCCAATACTGTGATTGGCGAGCTCGGCAAGACTTGCTTACCATCATGCTTCTCCATGAAAAGGTGGTGGAAGTTCTTAATCCTTTGGCACGTGATTATAAGTCCATTGGCACCATGAAAAAGGAGCTAGCAGAGTTGCAGGAAGAATTAGCGCAAGCACACCAACAGGTTCATATATCTGAGGCAAGGGTGTCCACTGCTTTAGATAAACTAGCTTACATGGAAGAATTGGTAAATGATAGGCTGTTGCAAGATAGCACAACTGAAGTTTCCCAGGCATCCTCTTCCCCCAGTACTTCTTTTAAATCTGTAGATATAGAAAAGAGAAGACCGAGAAAAAGCTTGGAAGTATCAGGTCCAGTTCAGTCATACCATCCCCACTTGAAGAATTTCTGGTATCCTGTAGCTTTCTCTACTGACTTGAAGGATGATACAATGATCCCAATAGATTGTTTTGAGGAGCCATGGGTTATCTTTAGAGGGAAAGATGGGAAGCCTGGATGTGTTCAGAATACCTGTGCACACAGAGCATGTCCTCTGCACCTTGGTTCTGTAAACGAGGGTCGCATCCAATGCCCTTACCATGGGTGGGAATATACTACTGATGGAAAATGTGAGAAAATGCCATCTACTCGACTGATAAATGTGAAGATAAAGTCATTGCCATGTTTTGAAAAAGAGGGGATGATCTGGATTTGGCCTGGCAGTGAGCCCCCAACAGCCACCCTTCCATCTTTGCTACCTCCATCTGGATTTGAAATCCATGCTGAGATTGTCATGGAGCTTCCAGTGGAACATGGGTTACTTTTGGATAACCTTTTGGATCTTGCACATGCCCCTTTTACTCACACTTCAACTTTTGCTAAGGGTTGGAGTGTTCCCAGCTTGGTAAAATTTTTGACACCTGCATCTGGCCTACAAGGATATTGGGACCCCTATCCAATTGATATGGAGTTTCGGCCACCTTGCATGGTTCTATCAACCATTGGAATTTCGAAGCCTGGTAAACTGGAAGGACAAAGCACCAATCAGTGCGCCACACACCTGCACCAACTTCATGTCTGCTTACCATCTTCAAAACATAAAACAAGATTGCTATACAGAATGTCACTGGATTTCGCTCCTGTGCTTAAGCATATTCCTTTTATGCAACATCTATGGAGACATTTTGCAGAACAGGTTTTAAATGAGGATCTACGGCTAGTGGTAGGCCAGCAAGAGCGGATGAACAACGGTGCAAATGTATGGAATTTCCCGGTATCATATGACAAGCTTGGGGTTAGGTATAGACTATGGAGAGATGCCTTGGAGCGAGGAGCTAGGAAACTACCCTTCAGCAAATAA 1587 0.4379 MNAIATAAVLSLPFSFCKSSKLDARKGLKGRFRVFAVYGEEIDKKNAWSALFDVEDPRSKVPQYKGKFLDIYQALEVARYDIQYCDWRARQDLLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEELAQAHQQVHISEARVSTALDKLAYMEELVNDRLLQDSTTEVSQASSSPSTSFKSVDIEKRRPRKSLEVSGPVQSYHPHLKNFWYPVAFSTDLKDDTMIPIDCFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTRLINVKIKSLPCFEKEGMIWIWPGSEPPTATLPSLLPPSGFEIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTNQCATHLHQLHVCLPSSKHKTRLLYRMSLDFAPVLKHIPFMQHLWRHFAEQVLNEDLRLVVGQQERMNNGANVWNFPVSYDKLGVRYRLWRDALERGARKLPFSK* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0185 528 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 254 276 IPR015881 GO:0005506|GO:0051537
Apr1g0185 528 Pfam Rieske [2Fe-2S] domain 213 293 IPR017941 GO:0051537
Apr1g0185 528 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 70 528 - -
Apr1g0185 528 MobiDBLite consensus disorder prediction 169 183 - -
Apr1g0185 528 Coils Coil 117 144 - -
Apr1g0185 528 MobiDBLite consensus disorder prediction 169 188 - -
Apr1g0185 528 Gene3D - 336 523 - -
Apr1g0185 528 Pfam Vanillate O-demethylase oxygenase C-terminal domain 346 370 IPR044043 GO:0016491
Apr1g0185 528 SUPERFAMILY ISP domain 208 317 IPR036922 GO:0051537
Apr1g0185 528 SUPERFAMILY Bet v1-like 309 521 - -
Apr1g0185 528 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 213 313 IPR017941 GO:0051537
Apr1g0185 528 Pfam Pheophorbide a oxygenase 400 495 IPR013626 GO:0010277
Apr1g0185 528 Gene3D - 207 329 IPR036922 GO:0051537
Apr1g0185 528 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 70 528 - -
Apr1g0185 528 CDD Rieske_RO_Alpha_Cao 196 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0185 Apr-Chr1 2057823 2060948 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0185 K13600 - gmx:100806298 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0185 1 2057823 2060948 Apr1g0185 1 2057823 2060948 ECH