Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0151 ATGAATGTAAACCAAATCCAGTTAGTTTTACGCTGTTGTGGACGCTTTCAAGCTATCAAACATGCCAAATCAGTCCATTCTCATATAATAAAACTTGGCCTTCACAATCATCTTTTTCTCCTAAATAACATGATCTCTGTCTATGTAAAGTGTTCCCATTTCGATGATGCACGAACCCTTTTCGACAAAATGCCTCACAGGAACATAGTTTCTTGGACCACGATGGTCTCTGCTCTCACCAATTCTGGGAGAGCCCACGAGGCCCTCGCACTCTACACCCACATGCTCAAATCCAAAACTCTGCAACCCAATCAGTTTCTTTACTCTGCGGTTCTCAAGGCTTGTGGTCTTGTGGGAGATGCTGAATTGGGCAAGTTGATTCACCGACATATAACTCAGGCTAAGTTAGAGTTTGACACTGTTCTGATGAATGCCCTCTTGGATATGTACGTCAAATGTGGGAGTCTGAAGGAGGCAAAACAAGTTTTCTATGAAATCCCGTGTAAAAATTCTACTTCTTGGAACACCCTTATACTTGGGCATGCTAAAAATGGTTTGGTGAATGATGCGCTGAATCTGTTTGATCTAATGCTGGAACCGGATCTTGTGTCTTGGAACAGCATCATTACTGGTCTTGCAGAAAATGCAAGTCCTCGTGCTTTACAATTTATTTCCATGATGCACATGAAGGGCTTTAAACTTGATGAATTTACATTCCCGTGTGCCCTCAAAGTTTGTGGTCTTCTTGGCGAGTTAACCATGGGGAGACAGATTCATTGTTGTGTTATCAAGTCAGGGTTCGAGTGCAGCCGTTATTGTATATCAGCATTGATTGATATGTATTCAAATTGCAAGCTATTGGATGAAGCGATGGAAATATTTGATCAATTGTTCTGTCACTCTTCTCTTGCTGAAAGCTTGGCACTTTGGAATTCTATGCTTTCTGGGTATGTTGCCAATGAAGATTATGCAAGGGCTCTCAGTCTGATTGCTCGTATGCATCATTCTGGCGCACATTTTGATTCCTATACCTTTAGTATTGCTTTGAAGGTCTGCATCTATTTCCATAACTTGAGATTGGCATCTCAAGTGCATGGATTGGTCACTGCTAGTGGCTATGAATTAGATTATGTAGTTGGAAGCATTCTTGTTGATCTATATGTGAAACAGGGCAATATTAGCATAGCATTAAGATTGTTTGATAGGTTGCCTGATAAAGATGTCGTAGCTTGGTCTAGTTTGATTGCTGGTTGTGCTAGATTTGGTTCGGGTGCATTAGCTTTTTCCCTCTTTATGGATATGGTTCATTTGAATCTTGAGATTGATAATTTTGTCCTTTCAATTGTTCTAAAAGTTTCTTCAAGTTTTGCATCTCTTCAAAGTGGTAAGCAAATTCATTCTGTCTGTCTTAAGAAAGGGTATGGATCAGAGAGAATTATTACAACTGCTCTTATCGATATGTATGCAAAATGTGGTGAGATTGAGGATGCCTTAGCTTTGTTTCATTGTCTCTCTGAAATAGATACCATGTGTTGGACAGGGATTATTGTGGGATGTGCACAAAATGGAAGAGCAGATGAGGCAATTAGTCTTTTGCATAAGATGATAGAATCTGATACAAAACCAAATGAAATCACCATTCTAGGTGTTCTTACAGCATGTAGACATGCTGGCTTAGTTGAGGAGGCATGGACTTTGTTTAAGTCCATTGAAACACAGCATGGATTGACACCATGCCCAGAGCATTACAATTGTATGGTTGATATACTTGCTCAAGCAGGACGTTTCAAAGAAGTAGGAAAATTGATTAACGACATGCCATTTAAGCCTGACAAAACCATATGGTGCTCCTTGCTTGGTGCCTGTGGAACTCACAGGAACCGACATCTTGCAAATATTGTTGCCAGGCATCTTCTTACCACCTCACCAGAAGATGCTTCTGTATATATAATGCTGTCAAATGTTTATGCGGCTCTTGGAATGTGGAATAATTTAAGCAAAGCAAGAGAAGCTTTAAAAAAAGTAGGCATGAAAGGAGCTGGAAAAAGCTGGATCCAGATCTCTAATTGA 2070 0.4005 MNVNQIQLVLRCCGRFQAIKHAKSVHSHIIKLGLHNHLFLLNNMISVYVKCSHFDDARTLFDKMPHRNIVSWTTMVSALTNSGRAHEALALYTHMLKSKTLQPNQFLYSAVLKACGLVGDAELGKLIHRHITQAKLEFDTVLMNALLDMYVKCGSLKEAKQVFYEIPCKNSTSWNTLILGHAKNGLVNDALNLFDLMLEPDLVSWNSIITGLAENASPRALQFISMMHMKGFKLDEFTFPCALKVCGLLGELTMGRQIHCCVIKSGFECSRYCISALIDMYSNCKLLDEAMEIFDQLFCHSSLAESLALWNSMLSGYVANEDYARALSLIARMHHSGAHFDSYTFSIALKVCIYFHNLRLASQVHGLVTASGYELDYVVGSILVDLYVKQGNISIALRLFDRLPDKDVVAWSSLIAGCARFGSGALAFSLFMDMVHLNLEIDNFVLSIVLKVSSSFASLQSGKQIHSVCLKKGYGSERIITTALIDMYAKCGEIEDALALFHCLSEIDTMCWTGIIVGCAQNGRADEAISLLHKMIESDTKPNEITILGVLTACRHAGLVEEAWTLFKSIETQHGLTPCPEHYNCMVDILAQAGRFKEVGKLINDMPFKPDKTIWCSLLGACGTHRNRHLANIVARHLLTTSPEDASVYIMLSNVYAALGMWNNLSKAREALKKVGMKGAGKSWIQISN* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0151 689 PANTHER - 194 436 - -
Apr1g0151 689 PANTHER - 304 687 - -
Apr1g0151 689 PANTHER - 8 199 - -
Apr1g0151 689 SUPERFAMILY TPR-like 39 664 IPR011990 GO:0005515
Apr1g0151 689 Pfam E motif 625 686 IPR046848 -
Apr1g0151 689 Pfam PPR repeat family 67 115 IPR002885 -
Apr1g0151 689 Pfam PPR repeat family 309 352 IPR002885 -
Apr1g0151 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Apr1g0151 689 Gene3D Tetratricopeptide repeat domain 554 688 IPR011990 GO:0005515
Apr1g0151 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Apr1g0151 689 TIGRFAM PPR: pentatricopeptide repeat domain 173 199 IPR002885 -
Apr1g0151 689 TIGRFAM PPR: pentatricopeptide repeat domain 309 337 IPR002885 -
Apr1g0151 689 TIGRFAM PPR: pentatricopeptide repeat domain 70 99 IPR002885 -
Apr1g0151 689 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Apr1g0151 689 TIGRFAM PPR: pentatricopeptide repeat domain 42 70 IPR002885 -
Apr1g0151 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Apr1g0151 689 Pfam PPR repeat 511 538 IPR002885 -
Apr1g0151 689 Pfam PPR repeat 275 297 IPR002885 -
Apr1g0151 689 Pfam PPR repeat 382 407 IPR002885 -
Apr1g0151 689 Pfam PPR repeat 482 504 IPR002885 -
Apr1g0151 689 Pfam PPR repeat 582 606 IPR002885 -
Apr1g0151 689 Pfam PPR repeat 409 437 IPR002885 -
Apr1g0151 689 Pfam PPR repeat 142 169 IPR002885 -
Apr1g0151 689 Pfam PPR repeat 173 199 IPR002885 -
Apr1g0151 689 Gene3D Tetratricopeptide repeat domain 465 553 IPR011990 GO:0005515
Apr1g0151 689 Gene3D Tetratricopeptide repeat domain 252 356 IPR011990 GO:0005515
Apr1g0151 689 Gene3D Tetratricopeptide repeat domain 357 464 IPR011990 GO:0005515
Apr1g0151 689 Gene3D Tetratricopeptide repeat domain 123 251 IPR011990 GO:0005515
Apr1g0151 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Apr1g0151 689 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Apr1g0151 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 103 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0151 Apr-Chr1 1704501 1708025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0151 9 689 Glycoside Hydrolase AT3G49170 31.000 4.41e-113 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0151 - - gmx:100780678 1166.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0151 1 1704501 1708025 Apr1g0151 1 1704501 1708025 ECH