Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0146 ATGCATCCTTTCTGCTGCGTCTCCGCCATTTCCGACCAGGCGTCGCCGGTGAAACCTTTTGCTGATTTCGCCATGCCGCCTCTCCCCGCCGCCGTGAGATCCGATTCGGTTCACCGGCACAGCCACAGCGGGAATAGCGACTACGGAAGAGTGAGTCAGCGGGAGCAGCCGGTGGACGTGAAGATCAACGACCTTGTTGGGAACGGAATCTCCGGGATACTGTATAAGTGGGTTAATTACGGCAAAGGATGGAGGCCACGGTGGTTCGCGCTTCAAGACGGCGTGCTCTCCTACTACAAGATTCACGGACCAGATAAGATCGTCGTGAATCACGAAACCGAGAAGGGCTCCAAGGTTATCGGCGAAGAATCCATGCGTAGAATCAGTCGTAACCGCAATTCTCATCGCTACCAACACAGACGAAAGCCGTTTGGGGAAATCCATCTCAAAGTATCGACGATTCGCGAGAGCAAATCGGATGACAAGCGGTTTTCGGTTTTCACGGGAACGAAGAGGCTTCACTTGAGGGCGGAGACACGTGATGATCGTGTGGCGTGGATGGAGGCGTTGCAGGCGGTGAAGGATATGTTCCCGCGGATGTCGAACAGCGAGTTGATGGCTCCGGTGGACAATGTAACCGTCTCGACGGAGAAACTGAGACACCGGCTTTTGGAAGAAGGTGTGAGCGAGGAAGCCATTCAGGACACTGAGCAAATCATGAGAAGTGAGTTTGCGGCGCTGCAAAACCAGCTACTGCTGCTTAAGCAGAAGCAGTCCATTCTCATTGACACGTTGCGGCAATTAGAGACAGAAAAGGTTGATCTGGAGAATACAGTTGTTGATGAGAGCCAAAGACAGTGGAATGATGAAGAGGCTTCCCCAAGATTAGCTGAATCTGAGGATGATAACGAGAGAAATGATGCTGCAGAGGAAGAAACAGATGATGATGACAATGTCTTTTTTGATACTCGTGATATTCTATCGTCCAGTTCTTTTAAAAGTAACGGGTCTGATTATCGAGCATCGTCTTTCTCTTCAGATGATGAAGGGTTCTATGCATTTGAATCAGAGGAGGATGTAGATCCTTCGATTAGATACATTGGAACCAATTACCCTCATGTTAAGCGGCGTAAGAAATTGCCAGACCCTGTAGAAAAAGAGAAAGGTGTCAGTCTTTGGTCAATGATTAAGGATAATATTGGGAAGGATCTAACAAAAGTTTGCCTTCCTGTTTATTTTAATGAGCCTCTGTCATCCCTGCAAAAGTGTTTTGAAGAGATGGAATATTCATATCTGCTGGACCAAGCATACGAATGGGGAAGAAGGGGTAATAGCCTCATGAGGATTCTCTATGTTGCAGCTTTTGCTGTATCTGGCTATGCTTCAACTGAAGGAAGAATTTGCAAACCATTTAATCCATTACTTGGGGAAACATATGAGGCTAACTACCCAGACAAAGGCCTTCGTTTTTTCTCAGAGAAGGTCAGTCATCACCCTATGATCGTTGCATGTCACTGTGAGGGTACTGGTTGGAAATTTTGGGGAGATAGCAACCTAAAGAGCAAATTTTGGGGTCGATCAATTCAGCTTGACCCTGTCGGTATTTTGACTTTGGAATTTGATGATGGAGAGGTTTTCCAGTGGAGCAAGGTTACTACATCAATATACAATCTCATATTAGGAAAGCTATACTGTGATCACTATGGTACAATGCGTATACAGGGAAACCGAGAGTACTCATGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAACCCTCACCAGGTTCACGGTATCATTCAAGATAGGAACGGAAAAACTGTATCAACTTTGTTTGGAAAATGGGATGAAAGCATGCATTATGTTAATGGAGACTGCACTGGGAAAGGGAAAGGTCATGAATCTCTGTCAGAAGCCCATTTACTCTGGAAGCGAAGCAAGCCTCCCAAGTTTCCCACTAGATATAACTTCACTCGCTTCGCCATCACATTAAATGAACTTTCTCCCGGATTGAAGGAGAAGTTGCCACCTACAGATTCCAGGTTAAGACCAGACCAAAGGTATTTGGAAAATGGAGAGTATGACATGGCAAATTCAGAAAAGTTACGGCTAGAGCAGCGGCAGCGCCAGGCTAGGAAGATGCAAGAAAGTGGTTGGAAACCTCGGTGGTTTGCTAAGGATAAAGCGAGCGGGACATACCGCTACATAGGTGGGTATTGGGAGGCCCGACAACAAGGAAAATGGGACTCCTGCCCTGACATCTTTGGTCAAATTCCTTCGGATCATATTTCAGACGAAGGTCAAATTACATTTTAG 2322 0.4617 MHPFCCVSAISDQASPVKPFADFAMPPLPAAVRSDSVHRHSHSGNSDYGRVSQREQPVDVKINDLVGNGISGILYKWVNYGKGWRPRWFALQDGVLSYYKIHGPDKIVVNHETEKGSKVIGEESMRRISRNRNSHRYQHRRKPFGEIHLKVSTIRESKSDDKRFSVFTGTKRLHLRAETRDDRVAWMEALQAVKDMFPRMSNSELMAPVDNVTVSTEKLRHRLLEEGVSEEAIQDTEQIMRSEFAALQNQLLLLKQKQSILIDTLRQLETEKVDLENTVVDESQRQWNDEEASPRLAESEDDNERNDAAEEETDDDDNVFFDTRDILSSSSFKSNGSDYRASSFSSDDEGFYAFESEEDVDPSIRYIGTNYPHVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEEMEYSYLLDQAYEWGRRGNSLMRILYVAAFAVSGYASTEGRICKPFNPLLGETYEANYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFWGDSNLKSKFWGRSIQLDPVGILTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNREYSCKLKFKEQSIIDRNPHQVHGIIQDRNGKTVSTLFGKWDESMHYVNGDCTGKGKGHESLSEAHLLWKRSKPPKFPTRYNFTRFAITLNELSPGLKEKLPPTDSRLRPDQRYLENGEYDMANSEKLRLEQRQRQARKMQESGWKPRWFAKDKASGTYRYIGGYWEARQQGKWDSCPDIFGQIPSDHISDEGQITF* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0146 773 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 2 763 - -
Apr1g0146 773 Gene3D - 688 751 - -
Apr1g0146 773 Pfam Oxysterol-binding protein 391 745 IPR000648 GO:0008289
Apr1g0146 773 SUPERFAMILY PH domain-like 70 195 - -
Apr1g0146 773 SUPERFAMILY Oxysterol-binding protein-like 386 766 IPR037239 -
Apr1g0146 773 MobiDBLite consensus disorder prediction 281 302 - -
Apr1g0146 773 Pfam Pleckstrin homology domain 75 191 - -
Apr1g0146 773 MobiDBLite consensus disorder prediction 34 54 - -
Apr1g0146 773 ProSiteProfiles PH domain profile. 67 195 IPR001849 -
Apr1g0146 773 Gene3D - 477 652 - -
Apr1g0146 773 MobiDBLite consensus disorder prediction 303 319 - -
Apr1g0146 773 Gene3D - 68 197 IPR011993 -
Apr1g0146 773 Coils Coil 265 285 - -
Apr1g0146 773 SMART PH_update 68 197 IPR001849 -
Apr1g0146 773 MobiDBLite consensus disorder prediction 281 320 - -
Apr1g0146 773 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 763 IPR000648 GO:0008289
Apr1g0146 773 CDD PH_ORP_plant 70 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0146 Apr-Chr1 1651164 1658154 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0146 K20456 - gmx:100137077 1404.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0146 1 1651164 1658154 Apr1g0146 1 1651164 1658154 ECH