Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0136 ATGGAAAACGCCGACGTTTTTTTGGGCTTACACGACTTCCTCGAGCGCATGCGGCAACCTTCCGCCGCTGATTTCGTCAAAGGAATCAAAAGTTTCATTGTTTCGTTTTCGAATAATGCTCCTGATCCCGAGAGGGACAGTGCTGCGGTTCAAGAGTTCCTCGCCAACATGGAAGCGGCTTTCAGAGCTCATCCACTTTGGTCTGGTTGCTCTGAGGAGGAACTCGAAAGTGCCGGTGAAGGGCTTGAGAAGTATGTCATGACCAAGTTATTTGCTCGTGTATTTGCTTCGCTTTCGGATGATGTAAAACTTGATGACCAACTTTCTGAGAAGATGGCTTTGATTCAACAGTTTATTCGACCAGAAAATTTAGATATCAAGCCAGCATTTCAGAATGAAACATCATGGTTGCTTGCTCAGAAAGAATTGCAGAAGATCAACATGTACAAGGCACCCAGAGACAAACTTGTCTGTATTCTGAATTGTTGCAAGGTTATCGGTAACTTGCTGCTCAATGCTTCTGTTGCTTCCAAAGAGAATCCTCCAGGAGCTGATGAATTTCTTCCTGTGCTGATTTATGTTACCTTAAAGGCAAACCCTCCGCAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGACGTCAATCTCGATTGGTTGCAGAAGCTGCATATTATTTTACAAACATGCTCTCTGCTGAGTCCTTCATCTCAAACATTGATGCAAAATCCATTTCAATGGATGAGGCTGAGTTTGAGAGAAACATGGAATTTGCTCGTGCTCTGCTTTCAGCTGATACTCAAGATCCCAGTTCACCTTATCCAAATAATGGACAGTATCCTAGAGCAGAACCTACTAAGCACAGAAATAAAGCATTGAATGATAATAAGGACACTGCATTACGAACTCCATCTTCTGGTGCAAAATCAGAAGGCAAGAAAGTTACTTTTGCAGACGAGTCATTGATCATGAAAGTTCCATCCCTATCAGATTTGGAGAATAAAGGAGCAAATATGATTTTAAAGGAGGATAAGTTGTCTGAAGTTTTCAGGGAGTTTCCATATTTGTTTGCAAGGGTAGGCGACCTGACAGTAGTTGAAGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTGCAAGTATGTTTGTCTTTCCAAAGGGTTAGGTGTCTCTTCTACATCTCATCCTCCATCCAATCCCCAAAATAATGCTCAAGACCAAGCTGAAACCACGGCAGATTATTCAGACAGTGGACCTGAAGATGCAAATAATAAATCAGAAGTACCTATTAATACAACAGAGCATACTGCGGATGAAGTTTCACTTCTTGAGGATAAAAAAATTGAATCTGATCCGCCTCAAGATGAGCCAGATGCACCTGAGGGTAACGCCTCCTCTTAA 1404 0.4174 MENADVFLGLHDFLERMRQPSAADFVKGIKSFIVSFSNNAPDPERDSAAVQEFLANMEAAFRAHPLWSGCSEEELESAGEGLEKYVMTKLFARVFASLSDDVKLDDQLSEKMALIQQFIRPENLDIKPAFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVIGNLLLNASVASKENPPGADEFLPVLIYVTLKANPPQLHSNLLYIQRFRRQSRLVAEAAYYFTNMLSAESFISNIDAKSISMDEAEFERNMEFARALLSADTQDPSSPYPNNGQYPRAEPTKHRNKALNDNKDTALRTPSSGAKSEGKKVTFADESLIMKVPSLSDLENKGANMILKEDKLSEVFREFPYLFARVGDLTVVEVEDLLNNYKQLVCKYVCLSKGLGVSSTSHPPSNPQNNAQDQAETTADYSDSGPEDANNKSEVPINTTEHTADEVSLLEDKKIESDPPQDEPDAPEGNASS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0136 467 MobiDBLite consensus disorder prediction 266 312 - -
Apr1g0136 467 SMART vps9_2 135 255 IPR003123 -
Apr1g0136 467 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Apr1g0136 467 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Apr1g0136 467 MobiDBLite consensus disorder prediction 392 467 - -
Apr1g0136 467 PANTHER BNAC09G47180D PROTEIN 1 406 - -
Apr1g0136 467 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 406 IPR045046 GO:0005085|GO:0016192
Apr1g0136 467 MobiDBLite consensus disorder prediction 439 455 - -
Apr1g0136 467 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Apr1g0136 467 Gene3D VPS9 domain 98 264 IPR037191 -
Apr1g0136 467 MobiDBLite consensus disorder prediction 392 438 - -
Apr1g0136 467 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Apr1g0136 467 Gene3D - 17 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0136 Apr-Chr1 1527294 1533109 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0136 K20131 - gmx:100810958 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0136 1 1527294 1533109 Apr1g0136 1 1527294 1533109 ECH