Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0133 ATGGCTGCTTTTCTTACGAATCAATCTTGGTTGGCTTCATGTCCATGTTCTACTTCCTTCTCTTCAATGCCCTTTACCCTACAACCCAAATTCCTACCATTTCCATCTCGCTCCATTTCAGGGTTTTCAATTTCCTGTGTTAATCGAAGGGCCCTTTTCAAATCTTTTCTCGCTTCCCAAGATTCCCTTTCAATTACGAATGATGAAACAGAGGGGACTTACAATGATTTAAGAGGGACAGATGATTATGAAGATCAAAAACCTTTACCCAGCTTAATGGTTCTCGTTGAAGCATACAGGGAAGCCTTTCTTAATGGGGATGAAAAAACTGCATCTCGAATTGAAGAGAGAATGTATTCAATAGCAAATAAAAAGAATGAATTGATTCAGAAAGTATCAACTTTATCGGCTGACAAAGTTGCTTCTAAGGAGAAATATCTTCGCTTACAAGCAGATTTTGATAATTTTAGAAAAAAATCTGACAAAGAAAGACTAAACATCCAATCCGATGCCCAACAAGAAGTCATTGAGAAACTCTTGTTGATGGTGGACAATTTTGAGAAAGCCAAACAACAGATTAAAGCAGCAACAGAGAAAGAGAAGAAGATTGATGCAAGCTATCAAGGTATTTACAAGCAGTTTGTGGAGATTATGAGGAGCCATCATGTTTCTGTGGTAGCAACAGTGGGCAAGCCTTTTAATCCCTTACTACATGAAGCCATTGCACGGGAGGAGTCCGTGGAGTTCAAGAAAGGGATTATAATTAAAGAAACCCGACGTGGTTTCTTGCTTAGAGATCGAGTTCTAAGGCCAGCACTTGTCAAGGTTTCCTTAGGGCCCGGCAATAAGAAATTTCCAGCATCTCCTGACAAGAACATGGAGCAACCTTCAACAGCTGCTGGAATAGATGAAAGATAG 918 0.3976 MAAFLTNQSWLASCPCSTSFSSMPFTLQPKFLPFPSRSISGFSISCVNRRALFKSFLASQDSLSITNDETEGTYNDLRGTDDYEDQKPLPSLMVLVEAYREAFLNGDEKTASRIEERMYSIANKKNELIQKVSTLSADKVASKEKYLRLQADFDNFRKKSDKERLNIQSDAQQEVIEKLLLMVDNFEKAKQQIKAATEKEKKIDASYQGIYKQFVEIMRSHHVSVVATVGKPFNPLLHEAIAREESVEFKKGIIIKETRRGFLLRDRVLRPALVKVSLGPGNKKFPASPDKNMEQPSTAAGIDER* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0133 305 PANTHER GRPE PROTEIN 1 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr1g0133 305 ProSitePatterns grpE protein signature. 233 276 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr1g0133 305 PANTHER GRPE PROTEIN HOMOLOG 1 296 - -
Apr1g0133 305 PRINTS GrpE protein signature 147 163 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr1g0133 305 PRINTS GrpE protein signature 175 190 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr1g0133 305 PRINTS GrpE protein signature 230 245 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr1g0133 305 PRINTS GrpE protein signature 257 276 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr1g0133 305 Hamap Protein GrpE [grpE]. 60 278 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr1g0133 305 Coils Coil 176 196 - -
Apr1g0133 305 Gene3D - 106 219 IPR013805 -
Apr1g0133 305 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 126 221 IPR013805 -
Apr1g0133 305 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 224 278 IPR009012 GO:0006457
Apr1g0133 305 Gene3D Head domain of nucleotide exchange factor GrpE 223 277 IPR009012 GO:0006457
Apr1g0133 305 CDD GrpE 143 276 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr1g0133 305 Pfam GrpE 122 277 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Apr1g0133 305 MobiDBLite consensus disorder prediction 281 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0133 Apr-Chr1 1505852 1508711 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0133 K03687 - gmx:100809893 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0133 1 1505852 1508711 Apr1g0133 1 1505852 1508711 ECH