Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0132 ATGGATGCTCAACCGGGTCTATCTCTCGGGTTGAGTTCCCCGTTGTCATCACCTGCGGCTCCACTGAGTGACAACTCGTTCTCGTTCATGGCCAATTCCACCCCTTCCGTTCCGTGGCGGTTACATAATGAAAGACACGAGAGCGTTCTGGTCAACGCCAAAGAAGAAGGAGACGAGGAGGGAGGAGGAGAAGAAGAAGAAAATGATGGTGGTGATGAAACGATCAACTTCATGGATCGGCGCGTGTGCGTGAAGAGGCAGATAGAGGAACAGCACATGTGTTTCCCTTCGAAGCGTGTGGCGGTGGAGTCAGTTGTGGGTTGGTGGAACCAGCCACTGGGTGTTGCAGATCCTGAGATTTTCGAAATCATGGAAAAGGAGAAGCTAAGACAGTTCAGGGGAATAGAGTTGATTGCTTCAGAGAACTTCGTGTGTAGGGCAGTGATGGAAGCTTTGGGTAGCCATTTGACTAATAAGTACTCTGAGGGAATGCCTGGTGCAAAGTACTATACGGGTAATCAATATATTGATCAAATTGAGTTTCTTTGTTGTCAGCGTGCATTGTTGGCATTTGATCTTCATCCCAACAATTGGGGGGTTAATGTTCAACCTTATTCTTGTACTTCTGCTAATTTTGCTGTGTACACTGGCTTGTTGCATCCTGGGGATAGGATCATGGGTTTGGATTCACCTTCTGGTGGGCACTTGAGTCATGGGTATTATACTCTTGGTGGGAAGAAAGTTTCTGCTGCTTCTATATTCTTTGAGACTTTGCCTTATAAGGTTAATCCTCATACTGGTTATATAGACTATGAAAAACTTGAGGAGAAAGCAACTGATTTTAGACCCAAGATACTTATTTGTGGTGGTAGTTCCTATCCCAGAGAATGGGACTATGCCAGGTTCAGACAGATTGCTGATAAATGTGGGGCGGTGTTGATATGTGACATGGCTCATATCAGTGGTCTTGTGGCGGCTAAGGAAGTAGCTAGTCCATTTGATTACTGTGATATTGTTACCTCAACAACCCACAAAAGTCTCCGAGGTCCTAGGGGAGGTATCATCTTTTATAGAAGGGGGACGAAACCAAGGAAGCAAGGCTTCATTCTCAATCACGGAGATGATAGTAATTATGATTTTGAGGAGAAGATAAACTTTTCTTTATATCCATCATTACAAGGAGGCCCCCACAATAATCATATTGCTGCTCTTGCCATAGCTTTAAAACAAGTTGCAACTCCCGAGTACAAAGCATACATGCAGCAGGTGAAGAAAAATGCGCAGACATTAGCATCTGCCTTGTTGAGAAGAAATTGCAGATTGGTGACTGGTGGGACCGACAATCATCTTTTGCTATGGGATCTAACAGCACTTGGCTTAATTGACAGAAACTATGAGAAGGTCTGTGAGGCGTGTCACATCACTCTCAATAAGTGTGCAATTTATGGTTCTATATCTCCTGGAGGAGTGAGAATTGGTACTCCTGCAATGACATCAAGAGGTTGTTTAGAGGAAGATTTTGAGACCATAGCCGATTTTCTTCTGAGGGCAGCTCAGATTACCAGCATTGTACAGAGGGAACATGGGAAGTCATGCAAAGATTTTCTCAGGGGTCTTCAGAATAATAAAGATATTTCCGAGCTCAGAAGTCGGGTTGAGACATTCAGTTCCCAGTTTGCAATTGAACCGAATCAGACAAAAGCTTCCCGAGAGCAAAAGAAGTTGCCTTTGACGTTAAAGCAGTCCAGGAATCTCACAGTGCTCTTTTCTCCACAGTCCTAA 1782 0.4433 MDAQPGLSLGLSSPLSSPAAPLSDNSFSFMANSTPSVPWRLHNERHESVLVNAKEEGDEEGGGEEEENDGGDETINFMDRRVCVKRQIEEQHMCFPSKRVAVESVVGWWNQPLGVADPEIFEIMEKEKLRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGAKYYTGNQYIDQIEFLCCQRALLAFDLHPNNWGVNVQPYSCTSANFAVYTGLLHPGDRIMGLDSPSGGHLSHGYYTLGGKKVSAASIFFETLPYKVNPHTGYIDYEKLEEKATDFRPKILICGGSSYPREWDYARFRQIADKCGAVLICDMAHISGLVAAKEVASPFDYCDIVTSTTHKSLRGPRGGIIFYRRGTKPRKQGFILNHGDDSNYDFEEKINFSLYPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQTLASALLRRNCRLVTGGTDNHLLLWDLTALGLIDRNYEKVCEACHITLNKCAIYGSISPGGVRIGTPAMTSRGCLEEDFETIADFLLRAAQITSIVQREHGKSCKDFLRGLQNNKDISELRSRVETFSSQFAIEPNQTKASREQKKLPLTLKQSRNLTVLFSPQS* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0132 593 MobiDBLite consensus disorder prediction 9 28 - -
Apr1g0132 593 CDD SHMT 117 555 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Apr1g0132 593 Pfam Serine hydroxymethyltransferase 115 513 IPR039429 -
Apr1g0132 593 MobiDBLite consensus disorder prediction 1 28 - -
Apr1g0132 593 Gene3D Aspartate Aminotransferase, domain 1 117 561 IPR015422 GO:0003824
Apr1g0132 593 Gene3D - 142 421 IPR015421 GO:0003824
Apr1g0132 593 MobiDBLite consensus disorder prediction 52 74 - -
Apr1g0132 593 Hamap Serine hydroxymethyltransferase [glyA]. 112 563 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Apr1g0132 593 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 79 562 - -
Apr1g0132 593 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 79 562 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Apr1g0132 593 MobiDBLite consensus disorder prediction 58 72 - -
Apr1g0132 593 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 337 353 IPR019798 GO:0030170
Apr1g0132 593 SUPERFAMILY PLP-dependent transferases 108 561 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0132 Apr-Chr1 1497407 1503639 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0132 K00600 - gmx:100776419 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0132 1 1497407 1503639 Apr1g0132 1 1497407 1503639 ECH