Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0123 ATGGGTTCATTTTTTAGTGTGGTGAATACCAAATCTGAGCCAAGGGAGTGGAATGGAGTCTCTCCAAATGAAACGTGTAAGAGGCAAAGAATGTCTCCTACTGTTGATGAAGAGATTCCGAGACTAATTCCTAATCTCCCTGACGAGTTATCTCTTCAGATTATTGCTAGACTTCCTAGAATTTGTTACTTCAAGCTAAGGCTGGTGTCAAGGAAGTGGAAGTCAACTATCATGAGTCCAGAACTATATGAAGTAAGAAAAGAGCTGGGGACAACGGAAGAGTGGCTATATCTGTTGATTAAGGTTGGAGAAAATAAACTTCTGTGGCATGCTCTTGATCCTTGTTCTAAGATATGGCAGAGGCTGCCTAATATGCCCAATGCTGTTGATGAAGAAGAATCTAGAAAGGGTTCTTCTAGGCCTTGGATTTGGAACATGGTGGAAGGTATCAGAATTGCTGAAGTTATTAGAGGCTTTCTTGGACAGAAGGATGCATTTGATGAAATGCCCTTTTGCGGTTCTGCAATTGGAGCTGTTGATGGATGTCTCTATGTTCTTGGTGGATTCTCTAAGGCTTCAACTATGAGATGTGTCTGGCGATTTGATCCAATGCAAAATACGTGGAGCAGGGTGACTTCCATGTCTACAGGTCGGGCATATTGTAAAACAGGCATCTTAAATAACAAACTTTATGTTGTTGGAGGGGTTTGTCAAGGTCAAGCTGGACTGGTTCCTCTTCAGTCGGCGGAAGTTTTTGACCCCTCTACAGATACATGGTCACAAGTACCTAGTATGCCATTCTCTAAAGCTCAGGTCCTGCCCAATGCTTTTTTGGCTGACATGTTGAAGCCTATTGCCACAGGGTTGACCTCATATATGGGAAGGTTGTTTGTTCCACAGAGTTTGTATTCATGGCCCTTTTTCGTCGATGTTGGGGGAGAAATATATGATCCTGAAACTAACTCATGGATTGAAATGCCAGCTGGAATGGGTGAGGGTTGGCCTGCAAAGCAGGCAGGTACGAAATTGAGTGTTGTAGTGGAAGGTGAATTATATGCTTTTGATCCTTCTAATTCTATGGATAGTGGAAGGATAAAGGTATATGATAAAGGTGAAGATGCTTGGAAAGTAGTTATTGGAAAAGTTCCCATATATGATTATGCTGATTCAGAGTCTCCATATCTGCTTGCTGGTTTCCATGGAAAGCTACATGTCATTACAAAAGATGCCAATCATGATATTGCTGTTCTGCGGGCTGACCTGCGCAATAATTTGGATTCATCACCATCGTCCTCAACTCTCTCACAAATTTCCTTGCATGAATTTCTGGAACCCGCTGCTGAATCAGATGCAGTTGTTTGGAAGGCAGTTGCCAGTAGGGGTTTTGGGCAGGCTGAACTAGTCAGTTGTCAAGTTATTGATATCTAG 1428 0.4251 MGSFFSVVNTKSEPREWNGVSPNETCKRQRMSPTVDEEIPRLIPNLPDELSLQIIARLPRICYFKLRLVSRKWKSTIMSPELYEVRKELGTTEEWLYLLIKVGENKLLWHALDPCSKIWQRLPNMPNAVDEEESRKGSSRPWIWNMVEGIRIAEVIRGFLGQKDAFDEMPFCGSAIGAVDGCLYVLGGFSKASTMRCVWRFDPMQNTWSRVTSMSTGRAYCKTGILNNKLYVVGGVCQGQAGLVPLQSAEVFDPSTDTWSQVPSMPFSKAQVLPNAFLADMLKPIATGLTSYMGRLFVPQSLYSWPFFVDVGGEIYDPETNSWIEMPAGMGEGWPAKQAGTKLSVVVEGELYAFDPSNSMDSGRIKVYDKGEDAWKVVIGKVPIYDYADSESPYLLAGFHGKLHVITKDANHDIAVLRADLRNNLDSSPSSSTLSQISLHEFLEPAAESDAVVWKAVASRGFGQAELVSCQVIDI* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0123 475 Gene3D - 109 383 IPR015915 GO:0005515
Apr1g0123 475 Pfam Kelch motif 218 266 IPR006652 GO:0005515
Apr1g0123 475 Pfam Kelch motif 170 215 IPR006652 GO:0005515
Apr1g0123 475 MobiDBLite consensus disorder prediction 1 31 - -
Apr1g0123 475 SUPERFAMILY Kelch motif 98 406 IPR015915 GO:0005515
Apr1g0123 475 Pfam F-box domain 44 83 IPR001810 GO:0005515
Apr1g0123 475 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Apr1g0123 475 SMART fbox_2 46 86 IPR001810 GO:0005515
Apr1g0123 475 SUPERFAMILY F-box domain 42 102 IPR036047 GO:0005515
Apr1g0123 475 SMART kelc_smart 182 228 IPR006652 GO:0005515
Apr1g0123 475 SMART kelc_smart 229 275 IPR006652 GO:0005515
Apr1g0123 475 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 3 475 - -
Apr1g0123 475 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 3 475 - -
Apr1g0123 475 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0123 Apr-Chr1 1422634 1426352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0123 43 262 EF-hand Containing Proteins AT4G39560 27.727 3.27e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0123 - - gmx:100806691 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0123 1 1422634 1426352 Apr1g0123 1 1422634 1426352 ECH