Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0113 ATGCATTTAAGGAGCAGAATCACTCTCCAAAATAAAGTCTCTACAGTGAACACTATGAGTGAAGGTCTTCAAAAAACTGCTACCAACGGCCACGAGAAAATGTTAATATCACAAGAACAGCAGGCAATGATCAGTGAGATGCGAAGGTTGATAGGGCCGTTATCAGATAGGGCATCTCTGTATTGTTCTGATGCAACCATCTTAAGATATTTAAGCTCGCGAAATTGGAATGTCAAGAAAGCAGCTCAAATGTTGAAACACAGCCTAAAATGGAGAAAAGAATGCAAACCTGAAGAGATCCGCTGGGAAGAGGTTATTAATGAAGCAGAGACAGGGGTAATGTATAGAACAAATTATTGTGACAAGTATGGGAGACCAGTGATCGTAATGAGACCTTGTCGCCAGAACTCAAAGTCACTAAAAGGACAGATGAACTATTTTGTATACTGCATGGAGAATGCGATTTTGAATCTTCCAGCACACCAGGAGCAGGTGGTCTGGCTGATTGATTTCCACGGTTTCAATTTGTCACATGTATCATTCAAGGTGGCACGTGAAACTGCCCGAATACTACAAGAGCATTATCCAAAGCGCCTGGGTTTGGCAATACTCTACAATCCACCGGCAATCTTCCAACCATTCTTCGCGATGGTAAAGCCCTTTTTAGAGTCTGAGACCTATAATAGAGTAAAGTTTGGTTACTCCGACGATCCCAACACAAAGAAGATTATGGAGGATTTGTTTAATATGGATAATCTTGAATCTGCATTTGGTGGGAATGGTGGCACAGGAGTTGACAAAATTAAATATGCTGAGAGAATGAAAGAGGAAGACAATAAGACACGTTCGTTCTGGACACGTGCAAACTCTCTGTCATCAGTCTCACAAAATGCAGATTCTGATGCTTCTAATGTCGAGAAAATAGACCGTTCCCCTGTTCCTAACTGA 948 0.4146 MHLRSRITLQNKVSTVNTMSEGLQKTATNGHEKMLISQEQQAMISEMRRLIGPLSDRASLYCSDATILRYLSSRNWNVKKAAQMLKHSLKWRKECKPEEIRWEEVINEAETGVMYRTNYCDKYGRPVIVMRPCRQNSKSLKGQMNYFVYCMENAILNLPAHQEQVVWLIDFHGFNLSHVSFKVARETARILQEHYPKRLGLAILYNPPAIFQPFFAMVKPFLESETYNRVKFGYSDDPNTKKIMEDLFNMDNLESAFGGNGGTGVDKIKYAERMKEEDNKTRSFWTRANSLSSVSQNADSDASNVEKIDRSPVPN* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0113 315 Pfam CRAL/TRIO domain 112 259 IPR001251 -
Apr1g0113 315 PANTHER GH16843P 19 311 - -
Apr1g0113 315 SUPERFAMILY CRAL/TRIO N-terminal domain 36 104 IPR036273 -
Apr1g0113 315 SMART sec14_4 108 262 IPR001251 -
Apr1g0113 315 SMART CRAL_TRIO_N_2 63 88 IPR011074 -
Apr1g0113 315 CDD SEC14 103 260 IPR001251 -
Apr1g0113 315 MobiDBLite consensus disorder prediction 290 315 - -
Apr1g0113 315 Gene3D - 8 304 IPR036865 -
Apr1g0113 315 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 19 311 - -
Apr1g0113 315 SUPERFAMILY CRAL/TRIO domain 102 280 IPR036865 -
Apr1g0113 315 PRINTS Cellular retinaldehyde-binding protein signature 66 88 - -
Apr1g0113 315 PRINTS Cellular retinaldehyde-binding protein signature 182 203 - -
Apr1g0113 315 PRINTS Cellular retinaldehyde-binding protein signature 215 234 - -
Apr1g0113 315 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 102 259 IPR001251 -
Apr1g0113 315 Pfam CRAL/TRIO, N-terminal domain 46 86 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0113 Apr-Chr1 1261065 1265062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0113 67 231 Acyl Lipid Metabolism Gene Families AT1G55840 23.404 1.62e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0113 - - gmx:100777065 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0113 1 1261065 1265062 Apr1g0113 1 1261065 1265062 ECH