Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0111 ATGGAGCACTTTAACAACGACGATCTCGAGTACGTCTTCGATGACTACTTCGACGTCGCTGAATTCGAAGACGACGACATTGTTCCTCAACCAACCTCCGATTTCGATTCTCAGGACTCCGACTTTGAAGATGATTTTGCAACGACTAATGCGAAGACGGATACGTCTGCTTGGGAAGCGAGAAACGGGAAAGATATTCAGGGAATTCCGTGGGAGAGGCTTAATTTTAGCAGAGACAAGTATCGCGAGACTCGATTGAAGCAGTATAAGAACTACGAGAACCTTTCGCGCTCTCGTCAGGACCTCGATAAGGAGTGTTTGAAGGTGCAGAAGGGGGAGGCCTTCTATGATTTCCAGTTCAATACAAGGCTTGTCAAATCGACAATTGTGCATTTCCAGCTGAGGAATTTGCTGTGGGCAACTTCAAAGCATGATGTATACCTAATGCAAAACTACTCAGTGATGCATTGGTCCTCGATACTACGAAGGAGTAAAGAAGTGCTTAATGTAGCCAAACCAATTATTCCAACCCTTCGTCATGGATTTTTGGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGACCGTTAAGGAAAACCTGACGGTGGCGGGTGGTTTTCAGGGTGAGCTGATTTGCAAGAATTTGAGTCATCCGGGAGTAGCATTCTGCGGTAAAATAACTACAGATGATAATGCCATAACCAATGCTGTTGATGTTTACCGCAATCCAATTGGGTCGTTGAGGGCCATCACGGCAAATAATGATTCCCAAGTTCGGGTTTTTGACGTGGAGAGTTTTTCTTCTCTTGGGTGTTTCAAGTATGATTGGTCTGTTAATAATGCTTCTGTTAGTCCGGATGGAAAGCTGTTGGCTGTTCTTGGGGACAGTACGGAGTGCTTGATAGCTGATGCTAACACCGGAAAGGTTACAGGGAGCCTAAAAGGGCACTTAGACTACTCTTTTGCATCGGCTTGGCACCCAGATGGACGAATATTGGCCACTGGGAATCAGGACACAACATGTAGGTTGTGGGACATAAGGAATCCTTCAGAGTCTATAGCTGTGCTAAAGGGAAGAATGGGTGCAATAAGAGCCTTAAAATTCACATCTGATGGACGGTTTTTGGCCATGGCTGAGCCAGCAGACTTCGTTCATATTTTTGACTCACATTCTGGCTATGTACAAGGTCAAGAAATAGATCTATTTGGCGAGATTGCTGGTGTATCCTTTAGCCCGGACACAGAGGCTCTATTTGTGGGTATTGCTGACCGAACCTATGGTAGCTTGTTAGAGTTCATCAGAAAACGCCACAATAGTTATCTTATCTAG 1332 0.452 MEHFNNDDLEYVFDDYFDVAEFEDDDIVPQPTSDFDSQDSDFEDDFATTNAKTDTSAWEARNGKDIQGIPWERLNFSRDKYRETRLKQYKNYENLSRSRQDLDKECLKVQKGEAFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSILRRSKEVLNVAKPIIPTLRHGFLAQPVSRVQISTMTVKENLTVAGGFQGELICKNLSHPGVAFCGKITTDDNAITNAVDVYRNPIGSLRAITANNDSQVRVFDVESFSSLGCFKYDWSVNNASVSPDGKLLAVLGDSTECLIADANTGKVTGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNPSESIAVLKGRMGAIRALKFTSDGRFLAMAEPADFVHIFDSHSGYVQGQEIDLFGEIAGVSFSPDTEALFVGIADRTYGSLLEFIRKRHNSYLI* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0111 443 Gene3D - 226 439 IPR015943 GO:0005515
Apr1g0111 443 SMART WD40_4 350 389 IPR001680 GO:0005515
Apr1g0111 443 SMART WD40_4 266 304 IPR001680 GO:0005515
Apr1g0111 443 SMART WD40_4 208 263 IPR001680 GO:0005515
Apr1g0111 443 SMART WD40_4 307 346 IPR001680 GO:0005515
Apr1g0111 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 355 IPR001680 GO:0005515
Apr1g0111 443 SUPERFAMILY WD40 repeat-like 186 426 IPR036322 GO:0005515
Apr1g0111 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 349 - -
Apr1g0111 443 PANTHER OS03G0386000 PROTEIN 1 442 - -
Apr1g0111 443 Pfam WD domain, G-beta repeat 309 346 IPR001680 GO:0005515
Apr1g0111 443 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 442 - -
Apr1g0111 443 ProSitePatterns Trp-Asp (WD) repeats signature. 333 347 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0111 Apr-Chr1 1239503 1244711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0111 251 426 Miscellaneous Gene Families AT5G08390 25.424 1.14e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0111 - - gmx:100775453 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0111 1 1239503 1244711 Apr1g0111 1 1239503 1244711 ECH