Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0101 ATGCTGAAGATATCAGACGACACAAGGAGAAACAACGACGTAGAACCAGAAACAAGGTTCGTTGGGATTCCCAGCACCCCAACAACGCCGTCATGTCTCCGCGTTCATCATCACCTTCACCCTGACCACGTGGCTGTTGGGTCCCCTGTTAACAGGGTGAATCCTTCTTCATCTTCTTCTGCGAACGGGTTTCATTCCAACCCATATGCACCCTCTCGCAACGATCACAAATTCTGGTTCGACTCTGACTCCTCCAATCTCTGTGACACCAAGTGGGTTAATGATCTGGGACTCTCCAACGATTTCTCCAGGATGAACATCAGTGTCTTCGATGGAACCCAAACCAGGGGATATGAATACGATGCATGTCCCTTTCAGGCTCCCTTTTCTTGTTTCAGTGAACCAGGAAACCTCGTATATGAGCATCTTACCAATGCGGCTTTTGGGAAAGGTTACACTTTTGGCACCCCATTTGGCTCCTCTCTCCCTCGTGATGATGCTTATCAAATGTATCATCACGTTGCGGAACAGAGGAAGAAGGAGCAACAGGGGACTAGTAGCTATCAGCTTCTCTGTGATCGTTTCATGGGTTCAAACGCTCTCGGAGCTGGAATGGATTCTGAAGGTAGCTGGAGGGTCAAGAGCCCGTTTAGGCTCTCTCAGATGACGCACACTGGAATGACTTTGAATCCTAATGCTCCATCGCATTTTTATGGTGCAGAAAAGGAAAGGGCTTTTACGAACAACACTGAACGTGCTTTTGACCCTGCTGCGTTTAGATGTGACAACAGTATTATCATACAAGGGAAAGATGTAAAACACTGCATTGACAACGGGTTCGGTTCTTTGACGGGCTGTAGAAGGACTAGTCCACGAGCTGAGGTTGCGGGGGAGAATGTTCCCAAGAACTTCTCTCATGGTCCTCCTTCTGGGAATGTTTTTGAGAATAACGGCACTCTCGGTAGTGATTTCACACTCCCCATGCTGCTGAACTTTTATTCTCTTGACGATGTGCAAGGTCACATGTATAAGATGGCAAAGGATCAAAACGGTTGTCGCTTTCTGCAGCGCCTGGTTGATGAGGGAACCTATCAGAATATGTGTGCGGTGTTTGAGGGAATCATCGGTAATGTGGTGGAACTCATGATGGATTCTTTTGGTAATTATCTTGTGCAGAAGTTGCTGGATGTTTGCAACGATGAACAAAAGTTGCAGATTGTGCTCATGTTGACTAAGGATCCAGGACAGCTTGTTCGCATCTCTTTAAATACACACGGGACGCGTGTGGTACAGAAGCTGATTGAGACCCTTAACTCCGCTAAGCAAATTTCATTGGTGAAGTCTGCTATTCAGCCAGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAACCACGTCATACAACGTTGCTTGCAATGCCTTAGCTGTCAAGATAATCAGTTTATTTTTGAAGCTGCCGTGAAGTTTTGTGTTGACATAGCAACTCATCGACATGGATGCTGTGTACTGCAACGTTGCATTGATCACTCAGTGGGAAAACAAAGAGATAAGCTGGTCACAGAAATCTGCAAACACGGGCTTCTCCTTGCTCAGGATCCATTTGGAAACTATGTTGTTCAATATATTATAGAGATGGAGACCCCAAATGCGTCAAGCAAACTGCTTGGTCAGTTCAAAGGGAATTATGTAAACATGTCTACTCAGAAATTTAGCAGTCACGTGGTTGAAAAATGCCTTAAGCACATTGGAGACAGCAGATCAAGAATAGTTCGAGAATTGCTATCTGCCCCTCACTTTGAACAGTTGCTGCAAGACCCATATGCCAACTATGTCATTCAATCTGCTTTAACTGTTACTAAGGGGTCTCTGCATGCATCTTTAGTTGAAGCAGTTCGTCCTCACAAAATCTTGCGCACCAGTCCATATTGCAAGAGGATTTTCTCTGGGAGCCTACTCAAGAAGTGA 1965 0.4534 MLKISDDTRRNNDVEPETRFVGIPSTPTTPSCLRVHHHLHPDHVAVGSPVNRVNPSSSSSANGFHSNPYAPSRNDHKFWFDSDSSNLCDTKWVNDLGLSNDFSRMNISVFDGTQTRGYEYDACPFQAPFSCFSEPGNLVYEHLTNAAFGKGYTFGTPFGSSLPRDDAYQMYHHVAEQRKKEQQGTSSYQLLCDRFMGSNALGAGMDSEGSWRVKSPFRLSQMTHTGMTLNPNAPSHFYGAEKERAFTNNTERAFDPAAFRCDNSIIIQGKDVKHCIDNGFGSLTGCRRTSPRAEVAGENVPKNFSHGPPSGNVFENNGTLGSDFTLPMLLNFYSLDDVQGHMYKMAKDQNGCRFLQRLVDEGTYQNMCAVFEGIIGNVVELMMDSFGNYLVQKLLDVCNDEQKLQIVLMLTKDPGQLVRISLNTHGTRVVQKLIETLNSAKQISLVKSAIQPGFLDLIKDLNGNHVIQRCLQCLSCQDNQFIFEAAVKFCVDIATHRHGCCVLQRCIDHSVGKQRDKLVTEICKHGLLLAQDPFGNYVVQYIIEMETPNASSKLLGQFKGNYVNMSTQKFSSHVVEKCLKHIGDSRSRIVRELLSAPHFEQLLQDPYANYVIQSALTVTKGSLHASLVEAVRPHKILRTSPYCKRIFSGSLLKK* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0101 654 ProSiteProfiles Pumilio RNA-binding repeat profile. 449 484 IPR001313 GO:0003723
Apr1g0101 654 ProSiteProfiles Pumilio RNA-binding repeat profile. 485 520 IPR001313 GO:0003723
Apr1g0101 654 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 194 654 - -
Apr1g0101 654 MobiDBLite consensus disorder prediction 1 16 - -
Apr1g0101 654 Gene3D - 329 651 IPR011989 -
Apr1g0101 654 SUPERFAMILY ARM repeat 334 647 IPR016024 -
Apr1g0101 654 ProSiteProfiles Pumilio RNA-binding repeat profile. 592 629 IPR001313 GO:0003723
Apr1g0101 654 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 194 654 - -
Apr1g0101 654 CDD Pumilio 334 648 IPR033712 GO:0003723
Apr1g0101 654 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 315 654 IPR033133 GO:0003723
Apr1g0101 654 MobiDBLite consensus disorder prediction 1 26 - -
Apr1g0101 654 ProSiteProfiles Pumilio RNA-binding repeat profile. 337 372 IPR001313 GO:0003723
Apr1g0101 654 ProSiteProfiles Pumilio RNA-binding repeat profile. 373 409 IPR001313 GO:0003723
Apr1g0101 654 Pfam Pumilio-family RNA binding repeat 561 594 IPR001313 GO:0003723
Apr1g0101 654 Pfam Pumilio-family RNA binding repeat 528 554 IPR001313 GO:0003723
Apr1g0101 654 Pfam Pumilio-family RNA binding repeat 490 523 IPR001313 GO:0003723
Apr1g0101 654 Pfam Pumilio-family RNA binding repeat 454 484 IPR001313 GO:0003723
Apr1g0101 654 Pfam Pumilio-family RNA binding repeat 416 443 IPR001313 GO:0003723
Apr1g0101 654 Pfam Pumilio-family RNA binding repeat 341 364 IPR001313 GO:0003723
Apr1g0101 654 Pfam Pumilio-family RNA binding repeat 377 407 IPR001313 GO:0003723
Apr1g0101 654 Pfam Pumilio-family RNA binding repeat 598 616 IPR001313 GO:0003723
Apr1g0101 654 ProSiteProfiles Pumilio RNA-binding repeat profile. 521 556 IPR001313 GO:0003723
Apr1g0101 654 SMART pum_5 412 447 IPR001313 GO:0003723
Apr1g0101 654 SMART pum_5 337 372 IPR001313 GO:0003723
Apr1g0101 654 SMART pum_5 557 591 IPR001313 GO:0003723
Apr1g0101 654 SMART pum_5 521 556 IPR001313 GO:0003723
Apr1g0101 654 SMART pum_5 594 629 IPR001313 GO:0003723
Apr1g0101 654 SMART pum_5 449 484 IPR001313 GO:0003723
Apr1g0101 654 SMART pum_5 373 408 IPR001313 GO:0003723
Apr1g0101 654 SMART pum_5 485 520 IPR001313 GO:0003723
Apr1g0101 654 ProSiteProfiles Pumilio RNA-binding repeat profile. 412 447 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0101 Apr-Chr1 1105759 1109086 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0101 - - ccaj:109817322 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0101 1 1105759 1109086 Apr1g0101 1 1105759 1109086 ECH