Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0093 ATGTCAGGTGGTGGATGCAGCATAGTGTGGTTCAGAAGAGATCTGAGGGTGGAGGATAACCCAGCACTTATTGCAGGAGTGAGAGCAGGAGCTGTGGTTGCAGTTTTCATATGGGCACCTGAAGAAGAAGGCCAATACTATCCTGGCAGGGTCTCCAGGTGGTGGCTCAAACACAGTTTGGCTCATCTTGATTCCTCTTTGAGAAGTCTTGGCACTCCTCTCATCACTAAACGATCCACTGATAGTGTTTCTTCTCTACTTGAGGTTGTCAAGTCCACTGGAGCTACTCAACTCTTTTTTAACCATTTATATGATCCGCTGTCACTTATAAGGGATCACCGAGCAAAGGAGGTTCTCACTGCTCAGGGCATAACAGTACGTTCCTTTAACGCGGATTTGTTATATGAACCATGGGATGTCAATGATGCTCGTGGTCGACCATTCACAACTTTTGCTGCTTTTTGGGAAAGATGTCTTAGCATGCCTTATGACCCTGAGTCACCTTGTCTCCCACCTAAAAGAATTATCCCAGGTGATGTATCAAGGTGCCCTTGTGATACATTGGTGTTTGAAGATGAATCAGAGAAGGGCAGCAATGCACTTCTTGCCCGAGCATGGTCACCTGGGTGGAGCAATGCTAACAAGGCATTGACCACATTCATAAATGGTCCATTGATTGAGTACTCAAAAAATCGCAGCAAAGCTGACAGTGCCACCACCTCACTTCTCTCACCCCATTTGCACTTTGGTGAGGTGAGTGTCAAAAAGGTTTTCCATCTTGTCCGCATCAAGCAAGTGTTGTGGGCCAATGAAGGAAACAAAGCCGGTCAAGAAAGTGTGAACTTGTTCCTCAAATCTATTGGTCTTAGAGAATATTCAAGGTACATTAGTTTCAACCACCCCTATAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCATGGGTTGTAAATGAAGGCTATTTTAAGGCATGGAGACAAGGCAGAACTGGGTACCCTTTGGTGGATGCTGGCATGAGGGAGTTGTGGGCCACTGGTTGGTTGCATGATCGGATACGTGTTGTAGTTTCAAGTTTCTTTGTGAAGGTTCTGCAGCTCCCTTGGAGATGGGGAATGAAATATTTCTGGGACACCCTCTTGGATGCAGATCTTGAAAGTGATGCTCTTGGTTGGCAATACATATCTGGTTCGCTCCCTGATGGTCGTGAACTTGACCGAATAGATAATCCACAGTTTGAGGGCTACAATTTTGATCCAAATGGAGAATATGTACGACGCTGGCTTCCAGAACTTGCTAGATTACCAACTGAATGGATACATCATCCATGGAATGCACCAGAAACAGTGCTTCAAGCAGCTGGAATAGAACTAGGATCAAATTATCCTCTTCCAATTGTGGTAATAGGTGCAGCAAAAGTTAGATTACAAGAAGCACTCTCAGAAATGTGGCAACAAGAGGCAGCTTCAAGAGCTGCAATTGAAAATGGAACTGAGGAAGGACTTGGAGACTCTTCTGAATCAGCTCCTGCTGCTTTTCCTCCAGACATACAAATGGAGGAAAGTCCTGAACCTATTAGGAACCATCCACATCCTGTTGCTCGACACTACCAGGATCAGATGGTTCCAAGCATTACTTCTTCCTTGTTGAGAGTGGAAGAGGAAGAAACTTCCTCTGATCTTCGAAACACGGTAGAAGAGAGCAGCAGAGCTGAAGTGCCAATAAATGTAAATGCACAAGAAAATGCAAGAGACACATTGAATGAAAGGGTGTTGCCGACTGTTCATAGGAATACACGAATACAACACAATACTATAATGGAGCTAAGAAATGGAGCTGAAGATTCTGCAGTAGAATCTTCAAGTAGTGGCAGGAGAGAAAGGGATGGAGGTGTAGTTCCAGTATGGTCTCCACCAGCCTCCAGTTACTCAGAACAATTTGTAGGAGATGAAAATGGTATAACCAGCAGTTCATCTTTCTTGCAAAGCCATCCTCAGTCTCACCAATTGCTGAATTGGAGGCGACTACCTCAGACTGGGTAA 2046 0.4487 MSGGGCSIVWFRRDLRVEDNPALIAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKHSLAHLDSSLRSLGTPLITKRSTDSVSSLLEVVKSTGATQLFFNHLYDPLSLIRDHRAKEVLTAQGITVRSFNADLLYEPWDVNDARGRPFTTFAAFWERCLSMPYDPESPCLPPKRIIPGDVSRCPCDTLVFEDESEKGSNALLARAWSPGWSNANKALTTFINGPLIEYSKNRSKADSATTSLLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNKAGQESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYNFDPNGEYVRRWLPELARLPTEWIHHPWNAPETVLQAAGIELGSNYPLPIVVIGAAKVRLQEALSEMWQQEAASRAAIENGTEEGLGDSSESAPAAFPPDIQMEESPEPIRNHPHPVARHYQDQMVPSITSSLLRVEEEETSSDLRNTVEESSRAEVPINVNAQENARDTLNERVLPTVHRNTRIQHNTIMELRNGAEDSAVESSSSGRRERDGGVVPVWSPPASSYSEQFVGDENGITSSSSFLQSHPQSHQLLNWRRLPQTG* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0093 681 Gene3D - 134 293 - -
Apr1g0093 681 MobiDBLite consensus disorder prediction 640 681 - -
Apr1g0093 681 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Apr1g0093 681 PRINTS DNA photolyase signature 332 348 IPR002081 -
Apr1g0093 681 PRINTS DNA photolyase signature 352 370 IPR002081 -
Apr1g0093 681 PRINTS DNA photolyase signature 391 405 IPR002081 -
Apr1g0093 681 MobiDBLite consensus disorder prediction 605 681 - -
Apr1g0093 681 PANTHER CRYPTOCHROME-1 1 603 - -
Apr1g0093 681 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Apr1g0093 681 PANTHER CRYPTOCHROME 1 603 IPR002081 -
Apr1g0093 681 MobiDBLite consensus disorder prediction 552 575 - -
Apr1g0093 681 Pfam Blue/Ultraviolet sensing protein C terminal 510 626 IPR020978 -
Apr1g0093 681 Gene3D HUPs 8 206 IPR014729 -
Apr1g0093 681 MobiDBLite consensus disorder prediction 554 568 - -
Apr1g0093 681 Pfam DNA photolyase 7 163 IPR006050 -
Apr1g0093 681 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 482 IPR014134 GO:0009785|GO:0009882
Apr1g0093 681 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Apr1g0093 681 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Apr1g0093 681 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Apr1g0093 681 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Apr1g0093 681 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0093 Apr-Chr1 1031693 1037295 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0093 K12118 - gmx:100233233 1246.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0093 1 1031693 1037295 Apr1g0093 1 1031693 1037295 ECH
Apr9g0934 9 17975223 17981697 Apr1g0093 1 1031693 1037295 PCT