Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2374 ATGGGGAAAAAAGTCAAAAAGAAGAGCCGGGCTTCTGCCAAAGAAAAGGGGGTTGCTACCCATTCTCCAAGAAAGGTTATGGAATCTTGCAACCTGACTGCGGAGTCTGTTGGTGAGGGGGTTTTAGTTGCAAAAGAGACAAATTCTTGCCCTCATATTGTAAAAGGTGTTAATTTAAATAGATTGTCTAGTATGATTGGGTCTTCTGGATCCATAAGATGCGAAGACTGTAGAGAAGGTGCTGCTGATAGGAGGAGTAGTAAAGGAAAAGGTAAACATGGGAAGAAGAAAGGTGGTGCATCATTAGACTCAAAATCCGAGTCAAAGTCTTTATGGGTCTGTTTGGAGTGTGGTCAATATACTTGTGGAGGTGTGGGGCTGCCTATAACACCTCGATGCCATGTGGTAGGGCATGCAAGGAAAAACGGGCATCCCTTAGTAGTTCATTTTGATAAGCCTCAACTATGTTGGTGTTTTCCTTGCAATATGCTTATTCAAGTTGATAAAATTGAAAAAACCGATGAAACCAGTCATCTTTCTGATGTTGTGAAATTGTTGAAAGGACGATCTTTGGAAAAATCATCAGTGGATATTGAGGATGTTTCCTTAGGGGGTGGCATTGTTAATTCAGAAATTAAGTCAGAAGATCTGTTAACCAATGATTCATATGGACAAGGGGGTTATGTAGTTCGAGGTATGGTTAATCTTGGGAATACTTGCTTCTTCAATTCAATCATGCAAAATCTGCTAGCTATGAATAGATTGCGGGACAGCTTTCTAAAGTTAGATGCTCCTGTTGGACCACTTATTAATTCCTTGAAGAAGCTTTTCACAGAAACAAACCCTGATTCAGGATTGAAAAATGTTATAAATCCTAGATCCTTTTTTGGTTGTGTATGTTCTAAATCACCGCAGTTTCGAGGATATCAGCAGCATGATAGTCATGAATTGCTCCGTTGTTTACTGGATGGGTTGAGTACTGAAGAACTAACTGGAAGGAAACAGAATGGTTCTCCCAAGATAGATGGGATCTCTTCCAATACTTTAGTTGATACTTTATTTGGGGGTCAGATATCTAGTACTGTATGTTGCATAGAATGTGGGCATTTCTCAACAGTGTATGAACCTTTTTTAGATCTTTCACTTCCTGTTCCAACTAAGAAACCTCCACCTCGAAAGGCCCAACAAGTATCTCGAACCAAAAAAGCAAAACTTCCACCAAAAAAAGTTGGAAAGACTCGAGTTAAAGTTAACAGGGATACCGATCCATTACCTGTTCAAAATGTATCAAACCAATTATCCAGCCATGAATCGTCTCGCCCTGATCTGTCCATCATATCGGTTTCTGGAGGGATGGGGACTTCTCCTGGTGATTCTACAGTACTGGGTTCTGAAGAAAGAAGCAGTGTGGCTGATAAAGATGACCTGTCTTCACCTAATTTGGTTACTGCTGGAGAGTCTCAACATATGCAAGTGCTCGACAGTGGTGCAGGGAAACCATCAGCTTCAGATAATTTTACATGGTTGGATTTTGTGGAAGCTGGAACCATGGTAGATGAATGTGATTTCATTTCCCAGAAGGAGGATGCTCCAGAGATACAGGATACTGAGAGCAAGGATAAATGCTTAAATGAGTTCCCTGCACAGGCTAGCTGTGAATCTAGTGGTTCGGTTTGTTTCCTAAAGGAGGATCAAGACCAAAGGCCTGATTCTTCAGCAAATGGGTGGGAAGATGAGATTCCATTACAAGTTCAAGGTTCAGAAGTGCTGTTACTTCCATACAAAGAAGAAAGTTCCTCTGCTGGTGAGATTGTTGGAAAAGATGGTGAGGGCTCCTCATCAGTTTTGGGTGGTGGTCAAGAAGAATTGGAGTTTGATGGCTTTGGTGACTTATTCAATGAGCCTGAAGTTGTTGTTGGACCTTCTCCCAGACCTTCTTCATGTAGTGAGGTCACAGAAGCTGGTTTTGTCATTGGAAGCAACAGTGAATCTGACCCTGATGAAGTAGATGATACAGATTCTCCGGTTTCTGTGGAGAGTTGCTTGGCACATTTTATAAAACCTGAGTTGCTCTCAGATGAAAATGCATGGCATTGTGAGAACTGTTCAAAAGTTCTCCAACGTCAAAAGATGGAAGAAAAAACACAGACTAGAACTGTATCCGATGGAAATGGGAGAGGAAGTCATGATGAACCATGGCATGCACCTAACTCTTGTCCCTTTAAAACCAAAAGCATTAGAAATGAGGACATAAAAAATGACAAAAATATAGAAACCTCTGTTTCACATGTTAAACATGGCAGAGAGCTTGAAAATGGTCAAAGAGATAACTTGAGTTTAATTAATGAAAGGGATCATGGGGCATTTGAAATGGAAGATAAACATAATGATGAATTACAGTCTTCAGGTTTTCATGAAGCTTGCAATGAAGAAAGGTGCAATCTTTCAGCTGCTGATTCTTGTATTACCGAAAATGTCCAAAGAAGAGATTCTCTGGTTTTAGGCAGTGATAACAATGACTTAGAAGAGACTGACTCAAGAAGTGTGAAAGTGAAGAGGGATGCAACTAAGAGAGTCCTCATTTATAAAGCTCCGCCTGTCTTGACCATTCATCTGAAGAGATTTAGCCAAGATGCCCGTGGTCGCTTAAGTAAATTAAATGGCCATGTCAATTTCAGAGAAGTAATGGATATTAGAACATATATTGATCCCAGGTGCATGAATGAAGACACGTATGAATACCATTTAGTTGGTGTAGTGGAGCACTCGGGAACTATGAGAGGGGGTCACTATGTTGCCTATGTGAGAGGGGGCCAGAGGAACAGAGGGAAGGGTGATCGAGTGAATGAGTGTTCCACATGGTATCAGGCAAGTGATGCATATGTACGTGAAGTTTCCCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTATTCTATGAAAAAAATTTGAATGGATCGTCTACTTTTTAG 2973 0.4077 MGKKVKKKSRASAKEKGVATHSPRKVMESCNLTAESVGEGVLVAKETNSCPHIVKGVNLNRLSSMIGSSGSIRCEDCREGAADRRSSKGKGKHGKKKGGASLDSKSESKSLWVCLECGQYTCGGVGLPITPRCHVVGHARKNGHPLVVHFDKPQLCWCFPCNMLIQVDKIEKTDETSHLSDVVKLLKGRSLEKSSVDIEDVSLGGGIVNSEIKSEDLLTNDSYGQGGYVVRGMVNLGNTCFFNSIMQNLLAMNRLRDSFLKLDAPVGPLINSLKKLFTETNPDSGLKNVINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELTGRKQNGSPKIDGISSNTLVDTLFGGQISSTVCCIECGHFSTVYEPFLDLSLPVPTKKPPPRKAQQVSRTKKAKLPPKKVGKTRVKVNRDTDPLPVQNVSNQLSSHESSRPDLSIISVSGGMGTSPGDSTVLGSEERSSVADKDDLSSPNLVTAGESQHMQVLDSGAGKPSASDNFTWLDFVEAGTMVDECDFISQKEDAPEIQDTESKDKCLNEFPAQASCESSGSVCFLKEDQDQRPDSSANGWEDEIPLQVQGSEVLLLPYKEESSSAGEIVGKDGEGSSSVLGGGQEELEFDGFGDLFNEPEVVVGPSPRPSSCSEVTEAGFVIGSNSESDPDEVDDTDSPVSVESCLAHFIKPELLSDENAWHCENCSKVLQRQKMEEKTQTRTVSDGNGRGSHDEPWHAPNSCPFKTKSIRNEDIKNDKNIETSVSHVKHGRELENGQRDNLSLINERDHGAFEMEDKHNDELQSSGFHEACNEERCNLSAADSCITENVQRRDSLVLGSDNNDLEETDSRSVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVNFREVMDIRTYIDPRCMNEDTYEYHLVGVVEHSGTMRGGHYVAYVRGGQRNRGKGDRVNECSTWYQASDAYVREVSLDEVLRCEAYILFYEKNLNGSSTF* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2374 990 MobiDBLite consensus disorder prediction 83 103 - -
Apr10g2374 990 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 982 - -
Apr10g2374 990 SUPERFAMILY Cysteine proteinases 230 982 IPR038765 -
Apr10g2374 990 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 186 IPR013083 -
Apr10g2374 990 Gene3D Cysteine proteinases 216 419 - -
Apr10g2374 990 Pfam Ubiquitin carboxyl-terminal hydrolase 232 980 IPR001394 GO:0004843|GO:0016579
Apr10g2374 990 Pfam Zn-finger in ubiquitin-hydrolases and other protein 74 167 IPR001607 GO:0008270
Apr10g2374 990 MobiDBLite consensus disorder prediction 1 24 - -
Apr10g2374 990 Gene3D Cysteine proteinases 735 986 - -
Apr10g2374 990 Gene3D Cysteine proteinases 645 722 - -
Apr10g2374 990 MobiDBLite consensus disorder prediction 713 729 - -
Apr10g2374 990 MobiDBLite consensus disorder prediction 600 620 - -
Apr10g2374 990 MobiDBLite consensus disorder prediction 384 481 - -
Apr10g2374 990 SMART Zf_UBP_1 102 155 IPR001607 GO:0008270
Apr10g2374 990 MobiDBLite consensus disorder prediction 394 412 - -
Apr10g2374 990 CDD Peptidase_C19K 855 981 - -
Apr10g2374 990 MobiDBLite consensus disorder prediction 713 743 - -
Apr10g2374 990 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 232 247 IPR018200 GO:0004843|GO:0006511
Apr10g2374 990 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 982 - -
Apr10g2374 990 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 231 983 IPR028889 -
Apr10g2374 990 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 914 931 IPR018200 GO:0004843|GO:0006511
Apr10g2374 990 ProSiteProfiles Zinc finger UBP-type profile. 48 184 IPR001607 GO:0008270
Apr10g2374 990 SUPERFAMILY RING/U-box 49 166 - -
Apr10g2374 990 MobiDBLite consensus disorder prediction 423 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2374 Apr-Chr10 35504437 35508905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2374 855 982 Miscellaneous Gene Families AT4G31670 32.061 3.16e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2374 K11844 - gmx:100780952 1610.89