Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2372 ATGAGTTTATCATTTTCTTCGGTGGCAGCAACGCCTTCTTGCATCATCGGAAGCAATAGGCAACCATCTTCTACAAGATTTCATGTTATAAGGTCGGAAGTGACAGCAGCTCCCAAGCATAGAACAGCGAGCGCGTTTCCCCAGTTGTCAAAACAAGGAGTTCCTCTTGCTGACTTACACGTACAAGAGGTTGTTCACAGACAGTCTCAGCCTCATGTTGCCACTGTTATTAGTCCTTCTACCAAGCCACCCAGTTTTCTGAAGGATGCCTACGAAATGTGCAGAAATATCTGTGCAGAATATGCCCAGACCTTCTATCTAGGAACTTCGCTTATGACGGAAGAAAGACAGAAAGCTATATGGGCAATTTACGTTTGGTGCAGGAGGACTGATGAACTGGTTGATGGTCCTAACTCTGTCCATATGAGCTCTGCCGTTCTTGATAGGTGGGAAGATAGATTGCATGGCCTTTTCAATGGACATCCCTATGATATGCTTGATGCTGCTCTTACTGATACGGTTTCCAAGTTTCATTTGGATATTAAGCCTTTCAGAGACATGATAGAAGGAATGAGAATGGATACAAGGAAATCCCGATACAAGAATTTCCAAGAGTTATATCTTTACTGCTACTACGTGGCGGGAACTGTTGGCTTAATGAGTGTTCCAGTAATGGGTATTGCCCATGAGTCTGTCCTCCCTGTTCAAAGTGTATATAATGCTGCACTATATCTGGGAATAGGAAATCAACTCACAAACATTCTTAGAGATGTGGGGGAGGATGCATTAAGAGGTAGAGTCTACCTTCCCCAAGACGAGCTTGCCCAGTTTGGTTTATGTGACGACGATGTTTTGTCAAGAAACGTCAGTGAAAGATGGAGAAAGTTTATGAAACAGCAGATTACAAGGGCAAGATTCTACTTCAACCGGGCAGAAGAAGGAGTTTCTCAGCTTGATAAGGCCAGTCGTTGGCCGGTTTGGTCCTCATTAATATTGTATCGTAAGATCTTGGATGCAATTGAAGACAACGACTATGACAATTTGACAAAGCGAGCCTATGTAGGACGAACTAAGAAATTTGTGCTGTTGCCTCTAGCTTATACAAGATCTCTCTCAAATCCCAAAACGAAACTTCATTATCTACCAAATTAG 1152 0.4288 MSLSFSSVAATPSCIIGSNRQPSSTRFHVIRSEVTAAPKHRTASAFPQLSKQGVPLADLHVQEVVHRQSQPHVATVISPSTKPPSFLKDAYEMCRNICAEYAQTFYLGTSLMTEERQKAIWAIYVWCRRTDELVDGPNSVHMSSAVLDRWEDRLHGLFNGHPYDMLDAALTDTVSKFHLDIKPFRDMIEGMRMDTRKSRYKNFQELYLYCYYVAGTVGLMSVPVMGIAHESVLPVQSVYNAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDDDVLSRNVSERWRKFMKQQITRARFYFNRAEEGVSQLDKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTKKFVLLPLAYTRSLSNPKTKLHYLPN* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2372 383 ProSitePatterns Squalene and phytoene synthases signature 1. 209 224 IPR019845 GO:0016765
Apr10g2372 383 SFLD Squalene/Phytoene Synthase Like 88 370 IPR002060 GO:0009058
Apr10g2372 383 ProSitePatterns Squalene and phytoene synthases signature 2. 245 270 IPR019845 GO:0016765
Apr10g2372 383 CDD Trans_IPPS_HH 92 359 IPR033904 GO:0004311
Apr10g2372 383 Gene3D Farnesyl Diphosphate Synthase 84 365 IPR008949 -
Apr10g2372 383 SFLD Phytoene synthase like 88 370 IPR044843 GO:0004311
Apr10g2372 383 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 9 378 - -
Apr10g2372 383 SUPERFAMILY Terpenoid synthases 89 372 IPR008949 -
Apr10g2372 383 Pfam Squalene/phytoene synthase 101 356 IPR002060 GO:0009058
Apr10g2372 383 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 9 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2372 Apr-Chr10 35488195 35489871 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2372 K02291 - gmx:100782394 607.831