Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2371 ATGTGCGCAGTGTCATATTCGGTGACATGGTCAATCCTTGTGGGTTGGCCTTCTTCTTCGCCTTCAAAATGTTATTCTCACAAAACCAGCGTTGGCATGAGTCCGACTCCAACAACTTGTAATAGATTAGCAGCTACGACGAAAGATGTGTGGACCAGAACATCGCCTTCTTCATCGTCCAACACCAACAGGCAACGTCGCCAACAACAACCTGCGTACTTGGACCACAGCGTGGACATGGAGGAGCTACTGGCGGCAATTGGGCAGACCCAGAACGAGGAGGAACTGTTGGCGGTAATGTCCCCCTTCAGCGGGAGGCAACTGTCTATTCGGTTCATGGTTTCGATGCTGTCCCGAGAGCCCGATTGGCAACGCGCCCTTGCCCTTCTCGATTGGATTAACGAAAAGGCACTCTATTCTCCCTCCCTCTTCGCTTACAACGTCGTTCTCCGTAACGTCCTTCGAGCAAAGCAGTGGCACCTCGCTCACGGCCTGGTCGACGAAATGCGCCAAAAGGGTCTTTCCCCTGATAGGTACACTTACTCCACCCTCATCACTTCTTTTAGCAAACACGGCTTGTTTGATTCTTCTCTGTTTTGGCTCCAGCAGATGGAGCAAGACAACGTTCCCGGCGACCTTGTCTTGTATAGTAATTTGATTGAGCTTGCCCGCAAGTTGTGCGATTATTCCAAGGCTATTTCCATCTTCACCAGATTGAAAGCCTCCTCTATCACTCCTGATCTCATTGCCTATAACTCTATGATCAATGTCTTCGGTAAAGCTAAGTTCTTCCGCGAGGCTCGCCTTCTTCTTCGGGAGATGAGGGACAATGGGATTCATCCCGATACCGTCAGCTACTCCACACTTCTTGCCATCTACGTTGACAATCAAAAGTTCGTTGAAGCACTCTCTCTGTTCTCTGAGATGAATGAAGCCAAATGCCCCCTTGATCTTACCACCTGTAACATAGTCATTGATGTTTATGGCCAGCTTCACATGGCCAAGGAAGCCGACCGCCTCTTCTGGAGCATGAAGAAAATGGGGATTCAACCCAATGTGGTTAGTTATAATACTCTCTTGAGAGTTTATGGAGAGGCTGAGCTATTTGGGGAGGCCATCCATCTGTTTCGTTTGATGCAAAGTAAGGGTGTACCACAGAATGTTGTCACCTACAACACTATGATTAATATCTATGGCAAGACTCTTGAGCACGAGAAGGCTACCAATCTCATTCAAGAAATGAAGAACAGAGGTATTGAACCAAATGCCATCACTTACTCAACCATAATATCTATCTGGGAAAAGGCAGGGAAACTGGACCGGGCAGCCATGTTGTTTCAAAAATTAAGGAGCTCCGGAGTTCGAATTGATGAGGTTCTTTACCAGACAATGATTGTAGCCTATGAGAGGGCGGGTTTGGTTGCTCATGCCAAACGTCTACTTCATGAGCTCAAGCGACCGGATAACATTCCCAGGGAGACTGCAATCGCAATTCTGGCCAGAGCTGGTAGGATTGAAGAGGCTACGTGGGTTTTCAGGCAGGCTTTTGATGCTGGAGAGGTCAAAGATATATCAGTATTCGGGTGCATGATTAATCTTTTCTCTAGGAACAAAAAGTATGCCAATGTAGTTGAAGTGTTTGAGAAGATGAGAGAGGCAGGATATTTTCCCGATTCTAATGTTATTGCTCTCGTGCTGAATGCTTTTGGAAAGCTGCGTGAATTTGATAAAGCAGATGCTTTATACAGAGAGATGCATGAAGAAGGGTGTGTTTTTCCGGACCAAGTTCATTTCCAGATGCTCAGTCTATATGGCTCAAGAAAGGATTTCACGATGGTAGAGTCATTGTTTGAGAAGCTGGATTCCAATCCCAATATCAACAAGAAAGAGTTGCATCTTGTTGTTGCTAGCATTTATGAGAGAGCTGATAAACTTAATGATGCTTCCCGAATCATGAATAGGATGAATCAAAAAGCAATCAGAAGTCACGATCATGCTGATTGCTGA 2007 0.4609 MCAVSYSVTWSILVGWPSSSPSKCYSHKTSVGMSPTPTTCNRLAATTKDVWTRTSPSSSSNTNRQRRQQQPAYLDHSVDMEELLAAIGQTQNEEELLAVMSPFSGRQLSIRFMVSMLSREPDWQRALALLDWINEKALYSPSLFAYNVVLRNVLRAKQWHLAHGLVDEMRQKGLSPDRYTYSTLITSFSKHGLFDSSLFWLQQMEQDNVPGDLVLYSNLIELARKLCDYSKAISIFTRLKASSITPDLIAYNSMINVFGKAKFFREARLLLREMRDNGIHPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIVIDVYGQLHMAKEADRLFWSMKKMGIQPNVVSYNTLLRVYGEAELFGEAIHLFRLMQSKGVPQNVVTYNTMINIYGKTLEHEKATNLIQEMKNRGIEPNAITYSTIISIWEKAGKLDRAAMLFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAIAILARAGRIEEATWVFRQAFDAGEVKDISVFGCMINLFSRNKKYANVVEVFEKMREAGYFPDSNVIALVLNAFGKLREFDKADALYREMHEEGCVFPDQVHFQMLSLYGSRKDFTMVESLFEKLDSNPNINKKELHLVVASIYERADKLNDASRIMNRMNQKAIRSHDHADC* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2371 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Apr10g2371 668 TIGRFAM PPR: pentatricopeptide repeat domain 320 353 IPR002885 -
Apr10g2371 668 TIGRFAM PPR: pentatricopeptide repeat domain 424 458 IPR002885 -
Apr10g2371 668 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
Apr10g2371 668 TIGRFAM PPR: pentatricopeptide repeat domain 179 210 IPR002885 -
Apr10g2371 668 TIGRFAM PPR: pentatricopeptide repeat domain 250 283 IPR002885 -
Apr10g2371 668 TIGRFAM PPR: pentatricopeptide repeat domain 389 423 IPR002885 -
Apr10g2371 668 TIGRFAM PPR: pentatricopeptide repeat domain 526 558 IPR002885 -
Apr10g2371 668 TIGRFAM PPR: pentatricopeptide repeat domain 565 594 IPR002885 -
Apr10g2371 668 TIGRFAM PPR: pentatricopeptide repeat domain 354 387 IPR002885 -
Apr10g2371 668 TIGRFAM PPR: pentatricopeptide repeat domain 145 177 IPR002885 -
Apr10g2371 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Apr10g2371 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Apr10g2371 668 PANTHER OS03G0856100 PROTEIN 44 659 - -
Apr10g2371 668 SUPERFAMILY TPR-like 210 550 IPR011990 GO:0005515
Apr10g2371 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Apr10g2371 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Apr10g2371 668 Pfam PPR repeat family 387 430 IPR002885 -
Apr10g2371 668 Pfam PPR repeat family 246 290 IPR002885 -
Apr10g2371 668 Pfam PPR repeat family 141 189 IPR002885 -
Apr10g2371 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Apr10g2371 668 Pfam Pentatricopeptide repeat domain 304 365 IPR002885 -
Apr10g2371 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Apr10g2371 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Apr10g2371 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Apr10g2371 668 Pfam PPR repeat 526 554 IPR002885 -
Apr10g2371 668 Pfam PPR repeat 565 590 IPR002885 -
Apr10g2371 668 Pfam PPR repeat 459 486 IPR002885 -
Apr10g2371 668 MobiDBLite consensus disorder prediction 46 72 - -
Apr10g2371 668 Gene3D Tetratricopeptide repeat domain 89 223 IPR011990 GO:0005515
Apr10g2371 668 Gene3D Tetratricopeptide repeat domain 224 335 IPR011990 GO:0005515
Apr10g2371 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Apr10g2371 668 Gene3D Tetratricopeptide repeat domain 342 414 IPR011990 GO:0005515
Apr10g2371 668 Gene3D Tetratricopeptide repeat domain 415 487 IPR011990 GO:0005515
Apr10g2371 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Apr10g2371 668 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 44 659 - -
Apr10g2371 668 Gene3D Tetratricopeptide repeat domain 488 666 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2371 149 660 Glycosyltransferase AT1G05670 21.415 1.92e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2371 - - gmx:100784025 1125.54