Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2364 ATGCATGTCATGTACTCCGTCATTCCTCAGATCCGCCACTTGCTCAACATTAACCGCCCCCACCACCCGCATCTCGGAGGACAAACACCTCTCGTCCCCAGGCAGGGTTTTCTTCTCCCACTTTCCGAATGCGAGTTCAGCATCGCTGCTGCAATCCAAGACATCCATTCTACATACAACTTCACCCCCGGCACTCGCCCCCCGAGGGCCACTGGTGCTGCAATCTCTGTTGCCATTGGACTTTTAGAGTCTTGCCACGTAAACACCGGCTCCAGGATCATGCTCTTCACCACTGGACCTGCTACTCTCGGACCCGGCATCATTGTACAGTCTGATCTCCGCCATTCCATCAGAACCCACCACCACATCTTCACTGCCCAAGCAACACACCATGCTAAATCCTCCTCTTTCTACACCCATATTTCAAAGAGGCTTTCTGACTCCACCGTTGTTCTTGATCTGTTTGCTTCTTCCCTCGACCAAGTCGGGGCAGCCGAGCTTCGCCAACCTGTTGAGCACTCTGGTGGATTCATGATTCTTGTGGACTCCTTTGATTCCGACCAATTCAGGAAATGTCTCCGCCATATATTTAAACGTGGCCGTGAGGGCCATTTGAACATGAACTTTGATGCAACTATTGAAATTGTGACTACTAAGGATGTGAAAATCTGTGGAGCTCTTGGTCCTTGTGTGTCTCTTAGAAAAAAGACCAGTTTAGTGAGTGAGACTGAGGTTGGACAAGGTGGTACCTCTGTGTGGAAGTTGAACACCCTCACTGACAAAACTTGTGTCGCTTTTTTCTTCCAAGTGAATGATGAACAGAAAATTCAACCCGGCTCTGCATTTTTGATCCAGTTTATAACACGGTACCGGCAGGGCAACATGGGACTCAGAAAAAGAGTGACCACTGCTGCAAGACGATGGGTTGCAAACCATTCTGCTGATATTGCTGCTGGGTTTGATCAAGAAGCCGCAGCGGCAGTAATGGCAAGGCTTGCTATACTCCGCGCAGAGACATGCTATCCTCGTGATGTCATTAGATGGCTCGATGACGCGCTTATCCGTTTTACTTCTAAGTTTGGGGACTATGTGCCGGAAGATCCTTCCTCCTTCCGCCTATCTTCCAACTTTTCCCTTTATCCCCAGTTTATGTTCCACTTGAGACGATCTCAATTCATTGATGTCTGTAACACTACTCCTGATGAAACTGCATTTTTCCGGCTTATGCTGAACCGTGAGGGAGTAGTAGGTTCTCTTATAATGATTCAACCTACTCTTTTCCAATATTCGTTTGATGGGCCACCTGTTCCAGTACTGCTTGATATTCGTTCCATTTCTCCAGATTTTATTTTGCTCTTTGATTCTTTCTTCCATGTGGTGATTCACTATGGGTCCAAGATTGCTCAGTGGAGGAAGCTGGGTTATGATAAGGACCCTAATCACGAGAACTTTAGAAAGCTGTTGGAAGCCCCAGAACTGGATGCAGAGCAATTGGTAGCCGACCGGCTTCCAGTGCCAAAGATTGTTAAATGTGATCAGCATAGTAGCCAGGCTAGGTTTCTTCTTGCCAAATTGAATCCCTCTGTTACACAAAATTCAACCTATACAGATGGTTCGGATATTATATTTACCGATGACTTGAGCTTGCAAGTTTTTCTAGACCAGTTGCAGGTACTGGCAGTGCAAAGCTGA 1692 0.471 MHVMYSVIPQIRHLLNINRPHHPHLGGQTPLVPRQGFLLPLSECEFSIAAAIQDIHSTYNFTPGTRPPRATGAAISVAIGLLESCHVNTGSRIMLFTTGPATLGPGIIVQSDLRHSIRTHHHIFTAQATHHAKSSSFYTHISKRLSDSTVVLDLFASSLDQVGAAELRQPVEHSGGFMILVDSFDSDQFRKCLRHIFKRGREGHLNMNFDATIEIVTTKDVKICGALGPCVSLRKKTSLVSETEVGQGGTSVWKLNTLTDKTCVAFFFQVNDEQKIQPGSAFLIQFITRYRQGNMGLRKRVTTAARRWVANHSADIAAGFDQEAAAAVMARLAILRAETCYPRDVIRWLDDALIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFHLRRSQFIDVCNTTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSISPDFILLFDSFFHVVIHYGSKIAQWRKLGYDKDPNHENFRKLLEAPELDAEQLVADRLPVPKIVKCDQHSSQARFLLAKLNPSVTQNSTYTDGSDIIFTDDLSLQVFLDQLQVLAVQS* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2364 563 Pfam Sec23/Sec24 beta-sandwich domain 209 309 IPR012990 -
Apr10g2364 563 Gene3D Severin 423 527 IPR029006 -
Apr10g2364 563 SUPERFAMILY beta-sandwich domain of Sec23/24 209 320 - -
Apr10g2364 563 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 10 563 - -
Apr10g2364 563 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 424 562 IPR036180 -
Apr10g2364 563 SUPERFAMILY vWA-like 13 199 IPR036465 -
Apr10g2364 563 SUPERFAMILY Helical domain of Sec23/24 321 423 IPR036175 GO:0006886|GO:0006888|GO:0030127
Apr10g2364 563 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 10 563 IPR037364 -
Apr10g2364 563 Pfam Sec23/Sec24 helical domain 321 417 IPR006900 GO:0006886|GO:0006888|GO:0030127
Apr10g2364 563 CDD Sec23_C 413 533 IPR037550 GO:0030127|GO:0090114
Apr10g2364 563 Pfam Gelsolin repeat 435 521 IPR007123 -
Apr10g2364 563 Gene3D von Willebrand factor, type A domain 6 197 IPR036465 -
Apr10g2364 563 Gene3D - 198 309 - -
Apr10g2364 563 Pfam Sec23/Sec24 trunk domain 34 198 IPR006896 GO:0006886|GO:0006888|GO:0030127
Apr10g2364 563 Gene3D Sec23/Sec24 helical domain 318 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2364 Apr-Chr10 35453364 35456880 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2364 K14006 - gmx:100784000 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2364 10 35453364 35456880 Apr10g2364 10 35453364 35456880 ECH