Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr10g2363 | ATGGTGAAGAAGAAGCAGGTACCCGACTGGCTCAACAGTTCTCTCTGGTCCTCCCCCTCCGACCACCACCGCTTATCCGCAGCCCTCGAGCCACCGTCTCCTCCTTCTCCCGTTCCTCCTCCTGCTCCTGCTGCTCCTCCTCCGCCTCCCCCGACAATCCCACCCAATCACAATGGCGTTAGTACCTCTCCTTCTTCTTCGTCCGCCTCTTCCTCCGCAGATGAAATCTCCCGCCAGGGCCAGGCTCAGGCTCAGGCTCAGGCTCACTTGTTGGCCGAGTTATCTAGGAAGGTAATAGACATGCGCGAGTTGAGGAGAGTGGCTTCTCAAGGTGTACCCGATGCTGCCGCCGCTGCTTTACGCCCTACGCTCTGGAAGCTTTTGCTTGGATATCTTCCCCCCGATCGTGGCCTTTGGTCCTCTGAATTAGGCAAGAAAAGGTCTCAGTACAAACATTTCAAAGAAGACCTCCTCATGAACCCTTCAGAAATCACCAGGAGGATGTACAACGTCGCTACTCTCGACATCGATGATGCTAAATCTCAGTCTAGGGGCTTGCTTTCTAGATCACAAATCAGTCACGGGGAACACCCTTTGAGTCTTGGCCACACCAGCATATGGAATCAGTTCTTCCAGGACACAGAGATCATAGATCAGATTGACCGAGATGTAAAACGTACTCATCCAGATATGCACTTCTTCTCTGGTATAAGATATGTTCAAGGGATGAATGAAGTATTGGCTCCTCTGTTCTATGTGTTCAAAAATGATCCTGATGAGGAAAATGCGGCCTTTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAACTATTGAGTGGATTCCGAGATAATTTTTGTCAACAACTTGACAATAGTGTTGTTGGGATCCGTTCCACTATTACAAGATTGTCCCAGCTTTTGAAAGAACATGATGAAGAACTATGGCGTCATCTTGAGGTCACAACTAAAGTCAATCCCCAATTCTATGCATTCAGGTGGATTACCCTCCTCTTGACTCAGGAATTTAATTTTGCTGAAAGTCTTCATATATGGGACACCCTTTTAAGTGATCCAGAGGGGCCACAGGAGACACTTCTCAGAATATGCTGTGCAATGCTAATTCTCGTTCGTAGGCGTCTTCTAGCGGGTGATTTCACTTCTAACCTCAAGTTGCTGCAAAATTATCCCTCTACAAACATTAGTCATTTGCTCCATGTTGCCAACAAGTTACGTGTACATTCAGTCTAG | 1248 | 0.476 | MVKKKQVPDWLNSSLWSSPSDHHRLSAALEPPSPPSPVPPPAPAAPPPPPPTIPPNHNGVSTSPSSSSASSSADEISRQGQAQAQAQAHLLAELSRKVIDMRELRRVASQGVPDAAAAALRPTLWKLLLGYLPPDRGLWSSELGKKRSQYKHFKEDLLMNPSEITRRMYNVATLDIDDAKSQSRGLLSRSQISHGEHPLSLGHTSIWNQFFQDTEIIDQIDRDVKRTHPDMHFFSGIRYVQGMNEVLAPLFYVFKNDPDEENAAFAEADTFFCFVELLSGFRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTQEFNFAESLHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQNYPSTNISHLLHVANKLRVHSV* | 416 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr10g2363 | 415 | ProSiteProfiles | TBC/rab GAP domain profile. | 115 | 358 | IPR000195 | - | |
| Apr10g2363 | 415 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 93 | 317 | IPR035969 | - | |
| Apr10g2363 | 415 | SUPERFAMILY | Ypt/Rab-GAP domain of gyp1p | 295 | 411 | IPR035969 | - | |
| Apr10g2363 | 415 | MobiDBLite | consensus disorder prediction | 58 | 84 | - | - | |
| Apr10g2363 | 415 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
| Apr10g2363 | 415 | Gene3D | putative rabgap domain of human tbc1 domain family member 14 like domains | 232 | 286 | - | - | |
| Apr10g2363 | 415 | MobiDBLite | consensus disorder prediction | 30 | 57 | - | - | |
| Apr10g2363 | 415 | Gene3D | - | 294 | 414 | - | - | |
| Apr10g2363 | 415 | SMART | tbc_4 | 108 | 384 | IPR000195 | - | |
| Apr10g2363 | 415 | Pfam | Rab-GTPase-TBC domain | 235 | 379 | IPR000195 | - | |
| Apr10g2363 | 415 | PANTHER | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | 236 | 413 | - | - | |
| Apr10g2363 | 415 | PANTHER | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN | 4 | 236 | - | - | |
| Apr10g2363 | 415 | PANTHER | YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN | 236 | 413 | - | - | |
| Apr10g2363 | 415 | PANTHER | YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN | 4 | 236 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr10g2363 | Apr-Chr10 | 35446942 | 35451237 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr10g2363 | K24796 | - | gmx:100778830 | 613.224 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Apr10g2363 | 10 | 35446942 | 35451237 | Apr10g2363 | 10 | 35446942 | 35451237 | ECH |