Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2352 ATGAGCACCGTTGATAAAATGTTGATCAAGGGAATCCGGAGCTTCGACCCGGAGAACAAGAACGTAATCACCTTCTTCAAGCCATTAACCCTAATCGTTGGCCCCAACGGTGCTGGCAAGACCACCATCATTGAGTGCTTGAAGCTTTCGTGCACCGGTGAGCTTCCTCCTAACGCTAGGTCTGGCCACAGCTTCATTCACGATCCCAAGGTTGCAGGGGAAACTGAAACGAAGGGACAGATTAAGCTCCGATTCAAAACGGCGGCAGGTAAGGACGTGGTTTGCATAAGGTCCTTTCAGCTCACGCAGAAGGCCTCCAAGATGGAATACAAGGCAATCGAGAGCGTCCTTCAAACTATTAATCCTCACACCGGCGAGAAAGTTTGCCTTAGCTATAGATGCGCTGACATGGATCGAGAGATTCCTGCGCTGATGGGTGTTTCCAAGGCCATTTTGGAAAACGTTATATTCGTTCATCAAGACGAAGCCAACTGGCCACTCCAGGATCCTTCCACCTTAAAGAAGAAGTTTGATGATATCTTCTCTGCTACTCGATACACTAAGGCATTGGAAGTTATTAAGAAACTTCACAAGGATCAGGCTCACGAGATTAAGACTTACAAGCTCAAACTCGAAAATCTTCAAACTCTCAAAGACGCTGCTTATAAGCTTCGGGAAAGCATTGCACAGGATCATGAGAAAACAGAGTCTCTAAAATGTCAACTACAAGAGTTGGATGGCAGCATTAAAGATTTGGATGATAAAATTCATAATGCGGAGAAATCATTGAAAGATTTGCGGAAGCTGCAGGAGCAGATATCAACTAAAACTGCTCAACGGAGCACTCTGTTTAAAGAGCAACAGAAACAATATGCAGCTCTTGCAGAGGAGAATGAAGACACTGATGAAGAGTTGATGGAATGGAAGACCAAGTTTGAAGAAAGGATTGCAATTTTGGAAACAAAAATAAGCAAGTTGGAACGAGAGATGAATGACACTGACACTAAAAGTTCTTTCCTTAAGCGGACCATTGATGATTCCATGTGGGAGATTAGCAAGCTACAAGCTGAAGCAGAAGCTCACATGTCTCTGAAGAATGAACGTGATTCCTCCATTCAAAATCTTTTTGCTAGGCATAATTTAGGATCTCTTCCAAAGTTACCCTTCAGTGCTGAGGTTGCTTTAAACCTCACTAATCTTGTAAAATCAAGATTGGTGGATCTTGAGAAGGATCTGGATGATAAAAAGAAAGCAAATGATAATGAACTCAAGATGGCATGGAATTGCTACATGAATGCAAATGACTGTTGGAAAAATACTGAGGCTAACAAACAAGCTAAGACAGAGATCAAGTGTGGCATTTTGAAGCGCATTGAGGAGAAAAAAAATGAGCTTGATTCATTTGAACTTCAAATATCTAATGTTAACTTTTCTCATATAGATGAAAGAGAAAGGAATTTGCGAAATGAGGTTGAGAGGAAGGCAAACCAACTTGCTGAAAGAGACTTTGAACCGAATATACGACAAGTGAAAAATGAGATATATAGCGTAGATCAAAAAATTAAGGCTGTCAATCGAGAGAAGGATATCATGGCTTCTGATTCAGAGGACAGAGTGAAGCTATCACTTAAGAAGGCAGAGTTAGAAAATCAGAAGAAGAAACATAGAAAGATAATTGATGACCAAAAGGACAAAATAAGAAAGGTGCTGAAAGGGAGGCTTCCTCCTGATAAAGATGTGAAGAAGGAGATTACACAAGCATTAAAGACTGTTGGAGCTGAATATGATGACCTGAATGCAAAATACCGCGAAGCTGAGAAGGAAATCAATATGTTGCAGATGAAAATACAAGAAGTTAATAGTAATCTATCCAAACACCACAAGGATTTGGAATCAAGAAAAAGATTTATTGAATCCAAGCTTCAGTCTTTGGATCAGCAATGTTCGGGAATTGATTCTTATCTCAGAGTTTTAGAGTCTGCCAAGGAGAAAAGAGATGTCCAGAAAAGCAAATTTAATATTGCTGATGGTATGCGACAAATGTTTGATCCTTTTGAAAGGGTTGCAAGAGCTCATCATATTTGCCCTTGCTGTGAGCGCTCTTTCTCTGCAGAAGAAGAAGACAGTTTTGTCAAAAAGCAACGAGTGAAGGCTGCTAGTTCAGCTGAACATATGAAAGTTCTTGCAGTGGAGTCCTCAAACGCAGAGTCTCATTATCAGCAGTTGGACAAACTTCGTATGGTTTATGAAGAATATCTTAAACTTAGCAAGGAGACAATCCCTAATGCTGAAAAGGAACTTCAGCAACTTAAAGAAGAGCTGGAGTACAAATCCCAGGCTCTCGACGATGTTTTGGGTGTTTTAGCACAAGTAAAGACTGACAAGGATTTGATTGAGGCATTGGTGCAACCTGTTGAAAATGCTGACCGACTTTTCCAAGAAATTCAAGCTTCGCAAAAGCAAGTTGAGGATTTAGAATATAAGCTTGACTTTCGAGGACAGGGAGTGCGGACTATGGAAGAAATTCAATTGGAGCTTAACACATTGCAGGGCACAAGGGACAATTTGCATACTGAACTGGAGAGGTTGTGGGATGAACAAAAGCATATGGAGCATGATCTATCAGATGTTCAAATACGGTGGCACACTCTAAGGGAGGAGAAAGTGAAAGCAACTAACATATTGCAAGATGTTAAAAGATTAGAAGAAGAATTAGAGCGTTTAACTGAAGAAAAGACCCAAGTTGATCTTGATGAGAAGCATTTAGCAGAAGCTCTGGGACCTTTATCCAAGGAGAAAGATAAATTACTTGCTGATCATAATGAACTGAAAATTAGACTTAACCATGAGTACGAGGACCTGGCTGAACAAAAGAGAAGTTATCAGCAAGAAGCCGAAGCACTTTTCAAAATGAATTCCAAGATCAAAGAGTACTCTGATTTAAAGAAAGGAGACAGGTTGAAGGAACTGCAAGAAAAGAAATTTCTATCAGAATCCCAACTTCGAAGTTGTGACACACGAAAGCAGGAAATTTTAGCTGAACTAAACAAGAGTAAAGATTTGATGCGAGATCAGGATCAGTTGAAAAGAAATATCGAGGACAACTTAAATTACAGGAAAACAAAGGCTGAAGTAGATGAGCTAGCTAGTGAAATTGAAACTCTGGAAGAAAAAATATTGAAGGTTGGTGGGGTTTCTGCAGTTGAAACTGAACTCCAGAAACTATCGCAGGAGAGGGAGAGACTTCTTTCTGAGTTAAACAGGTGCCATGGAACGATGTCTGTTTACCAAAGTAATATTTCCAAAAACAAGATTGATCTTAAGCAGGCTCAATACAAGGACATAGATAAGCGCTACTTTGATCAGCTTATCCAGCTTAAGACGACTGAAATGGCTAACAAGGACCTGGACAGATACTACAATGCACTTGATAAAGCACTAATGCGCTTCCACACAATGAAAATGGAAGAAATCAACAAAATTATAAGAGAATTGTGGCAACAAACTTATAGAGGACAGGATATTGACTACATTAGTATTCATTCAGATTCGGAGGGTGCTGGGACCCGTTCGTACAGTTACAAGGTTCTCATGCAGACCGGTGATGCAGAGTTGGAGATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTTCTGGCATCTCTTATCATACGGTTAGCTTTGGCCGAAACGTTTTGTCTCAATTGTGGAATACTTGCTCTGGATGAACCTACCACAAATTTGGATGGACCAAATGCTGAAAGTCTGGCTGCTGCTCTCTTAAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATCACTCATGATGAGCGTTTTGCGCAGCTGATTGGTCAGCGCCAGCATGCAGAGAGATATTATCGAGTCACAAAAGATGACCATCAGCACAGCATAATCGAATGTCAAGAGATATTTGACTAA 3951 0.4055 MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAHEIKTYKLKLENLQTLKDAAYKLRESIAQDHEKTESLKCQLQELDGSIKDLDDKIHNAEKSLKDLRKLQEQISTKTAQRSTLFKEQQKQYAALAEENEDTDEELMEWKTKFEERIAILETKISKLEREMNDTDTKSSFLKRTIDDSMWEISKLQAEAEAHMSLKNERDSSIQNLFARHNLGSLPKLPFSAEVALNLTNLVKSRLVDLEKDLDDKKKANDNELKMAWNCYMNANDCWKNTEANKQAKTEIKCGILKRIEEKKNELDSFELQISNVNFSHIDERERNLRNEVERKANQLAERDFEPNIRQVKNEIYSVDQKIKAVNREKDIMASDSEDRVKLSLKKAELENQKKKHRKIIDDQKDKIRKVLKGRLPPDKDVKKEITQALKTVGAEYDDLNAKYREAEKEINMLQMKIQEVNSNLSKHHKDLESRKRFIESKLQSLDQQCSGIDSYLRVLESAKEKRDVQKSKFNIADGMRQMFDPFERVARAHHICPCCERSFSAEEEDSFVKKQRVKAASSAEHMKVLAVESSNAESHYQQLDKLRMVYEEYLKLSKETIPNAEKELQQLKEELEYKSQALDDVLGVLAQVKTDKDLIEALVQPVENADRLFQEIQASQKQVEDLEYKLDFRGQGVRTMEEIQLELNTLQGTRDNLHTELERLWDEQKHMEHDLSDVQIRWHTLREEKVKATNILQDVKRLEEELERLTEEKTQVDLDEKHLAEALGPLSKEKDKLLADHNELKIRLNHEYEDLAEQKRSYQQEAEALFKMNSKIKEYSDLKKGDRLKELQEKKFLSESQLRSCDTRKQEILAELNKSKDLMRDQDQLKRNIEDNLNYRKTKAEVDELASEIETLEEKILKVGGVSAVETELQKLSQERERLLSELNRCHGTMSVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALLRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVTKDDHQHSIIECQEIFD* 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2352 1316 Coils Coil 884 918 - -
Apr10g2352 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 298 IPR027417 -
Apr10g2352 1316 Gene3D - 1065 1314 IPR027417 -
Apr10g2352 1316 Gene3D - 4 258 IPR027417 -
Apr10g2352 1316 Coils Coil 808 828 - -
Apr10g2352 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1286 IPR027417 -
Apr10g2352 1316 Coils Coil 1065 1092 - -
Apr10g2352 1316 TIGRFAM rad50: rad50 3 1309 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Apr10g2352 1316 PANTHER RAD50 1 1314 - -
Apr10g2352 1316 Coils Coil 937 971 - -
Apr10g2352 1316 Coils Coil 839 859 - -
Apr10g2352 1316 Coils Coil 481 501 - -
Apr10g2352 1316 Coils Coil 1038 1058 - -
Apr10g2352 1316 Coils Coil 235 279 - -
Apr10g2352 1316 Coils Coil 405 425 - -
Apr10g2352 1316 CDD ABC_Rad50 4 170 IPR045171 -
Apr10g2352 1316 Coils Coil 588 622 - -
Apr10g2352 1316 Coils Coil 538 565 - -
Apr10g2352 1316 Coils Coil 627 647 - -
Apr10g2352 1316 CDD ABC_Rad50 1205 1308 IPR045171 -
Apr10g2352 1316 Coils Coil 284 336 - -
Apr10g2352 1316 Coils Coil 753 780 - -
Apr10g2352 1316 Coils Coil 507 527 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2352 K10866 - gmx:100818545 2193.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g2352 10 35360695 35370477 Apr10g2352 10 35360695 35370477 ECH