Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2347 ATGAAAAGCCTATTTGTTGTCCTTGTAATCTTGGTTATAACTTCACCTAGCTTGTGTGCTAGAGTAAGCCTTGTTGATGTATCTGCTATCTCCAATGTTGTTACCTATGGCGCCAAGGGGGATGGCCAAACTGATGACTCACAAGCTTTTCTGAAAGCATGGCAAGAAGTGTGTGGTGCAAATCAGGGAGCCGCAACACTTCTCATACCGAAAGCACAAACATTCCTGTTGCAACCTGTGTCGTTCCAAGGTCCTTGCAAACCTGCAACCATTAATATAGAGCTTCAGGGAACTATCACTGCCCCAAAAGGAGTTAATGCTTGGCGATGGTCAGATATTAAGGATAGGAAAACATGGGTTCAATTCTTGGGCATAAGTGGCCTTGTAATTAACGGAGGAGGAAAAGTTGATGGCCAAGGTGCTGCATGGTGGAGCATAAGTCGTCGCGCCTCTGATAGACCCACTGCTATTCGATTCCTTAACTGTCAAAATCTAAGACTTAGCTCGTTGACGCACATCAACAGCCCCAGAAATCATATAAGCATAAACACATGCAATGGCGTAAGCATCTCCGATATTAATATTGTTGCACCAAATGATAGTCCAAACACCGATGGGATAGATATTGCAACATCATCTAACGTCTTAATACAGAATTCCAACATTGCAACTGGTGACGACTGCATTGCCATTATCACCGGTTCCACCTTCGTCAACATAACTGGCATTTTCTGTGGACCTGGCCACGGCATCAGTGTTGGTAGCCTCGGACAAGGTGGAACTAATGCTAAAGTAGAAGAGGTACATGTGCGGAATTGCACCTTCACTGGAACTACCAATGGAGCCAGAATCAAGACATGGGTGGGAGGATCGGGTTTTGCTAGGAAGATCACATTTGAAGATATTATGCTTGTTGGAACCAAGAACCCAGTGATTATTGACCAACGCTATTCTGACATTCCTGAAAACAATGGAGCAGTGCAAATAAGTGACGTTACTTACAGCGACGTGAGAGGAACTACTATTACTCCCAATGCAGTTCAACTCAACTGTGACTCTAGCATTCCATGTACCAACATTGTATTCGATCGTATTAACATAACCTCCGCAAATGGACAGAAAACATTTGGTACGTGCACTAATGAACGAGCCACATGCACTTCCTCGTGTAATCCAATTGTCTCATGTCGTTAA 1194 0.4389 MKSLFVVLVILVITSPSLCARVSLVDVSAISNVVTYGAKGDGQTDDSQAFLKAWQEVCGANQGAATLLIPKAQTFLLQPVSFQGPCKPATINIELQGTITAPKGVNAWRWSDIKDRKTWVQFLGISGLVINGGGKVDGQGAAWWSISRRASDRPTAIRFLNCQNLRLSSLTHINSPRNHISINTCNGVSISDINIVAPNDSPNTDGIDIATSSNVLIQNSNIATGDDCIAIITGSTFVNITGIFCGPGHGISVGSLGQGGTNAKVEEVHVRNCTFTGTTNGARIKTWVGGSGFARKITFEDIMLVGTKNPVIIDQRYSDIPENNGAVQISDVTYSDVRGTTITPNAVQLNCDSSIPCTNIVFDRINITSANGQKTFGTCTNERATCTSSCNPIVSCR* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2347 397 PANTHER - 19 396 - -
Apr10g2347 397 ProSitePatterns Polygalacturonase active site. 242 255 IPR000743 GO:0004650|GO:0005975
Apr10g2347 397 Gene3D - 20 394 IPR012334 -
Apr10g2347 397 PANTHER - 19 396 - -
Apr10g2347 397 SUPERFAMILY Pectin lyase-like 23 396 IPR011050 -
Apr10g2347 397 SMART pbh1 235 255 IPR006626 -
Apr10g2347 397 SMART pbh1 185 211 IPR006626 -
Apr10g2347 397 SMART pbh1 212 233 IPR006626 -
Apr10g2347 397 SMART pbh1 324 346 IPR006626 -
Apr10g2347 397 SMART pbh1 265 286 IPR006626 -
Apr10g2347 397 SMART pbh1 294 315 IPR006626 -
Apr10g2347 397 Pfam Glycosyl hydrolases family 28 62 385 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2347 Apr-Chr10 35339378 35341364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2347 1 389 Glycoside Hydrolase AT5G17200 43.499 2.91e-120 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2347 K01184 - jre:108997191 408.297