Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2342 ATGTCATTCTCTTCCTCTGTCCATGCACTTCAATCTCAACTCTGCTCCACGGCTCGCCGGAGCCCATTACTGGCAAAGAAGCTTCACGCAAAGATCATAAAAGCTGGTATCAACCGACACGAACCCTTCCCCAAAACTCTTTTAGACGCATACGGCAAATGCGGTCTCATCCAAGACGCACTTCAAGTGTTCGATACATTGCCCCGCCCAGACGTCGTTGCATGGGCCTCCCTCCTCACCGCCTGCAACCTCTCCAACCTCCCTCACCGTTCTCTCTCCATCTCACGCTCCATTCTCAACACTGGGTTGTTCCCCGACCACTTCGTCTTCTCCTCCATCGTCAAGGCTTGTGCTAACTTGGGTGCTCTTCATGTGAAACAAGGGAAACAAGTGCATGCTCGCTTCTTCCTCTCACCCTTCTCTCACGATGACGTTGTCAAGTCATCGTTGGTTGATATGTATGCGAAATTCGGGTTGTCCCATTATGGGCGTGCCGTTTTCGACTCCATTTCTTCACCGAATTCGATTTCTTGGACTGCCATGATATCTGGGTACGCGCGGAGTGGGAAAAAGTTTGAGGCTTTTCGACTGTTTCGTCAAACGCCGTATAGGAACTTGTTTGCTTGGACTGCTCTGATTTCTGGGATGGTGCAGAGTGGGAATGCGGTTGATGCTTTCAACTTGTTTGTTGAAATGCGGCGTGAAGGGATTAGTGTAACAGACCCGTTAGTTCTTTCCAGTGTGGTTGGTGCTTGTGCTAATTTAGCCGTTTTGGAGCTTGGGAAACAGATGCATGGTCTGGTTATAACCCTTGGCTATGAGTCTTGCTTGTTTATTAGCAATACCCTTGTAGATATGTATGCCAAATGCAGTGATCTTGTTGCTGCAAAATATATCTTCTCTGAAATGTGCAGAAAGGATGTAGTTTCTTGGACTTCAATAATTGTTGGCACTGCTCAGCATGGGCAAGCTGAGGAGGCATTGGCTTTGTACGATGACATGGTTTTGGCTGGAATTAAGCCAAATGAGGTGACCTTTGTTGGGTTGATCTGTGCCTGCAGTCATGCTGGTCTAGTTAGCAAGGGCCGTGCTGTGTTTAGGTCTATGGTTGAAGATCATGGGATTAGGCCATCTCTGCAGCATTATACTTGTTTGCTGGATCTTTTTAGTCGATCAGGACACCTTGATGAGGCAGAGAATCTCATTAGAACAATGCCAGTGAATCCGGATAATTCAACTTGGGTTGCTCTGCTGAGTGCTTGCAAGCAGCATGGGAACACCCAGATGGCAGTTAGGATTGCTGATCATCTATTAAATTTAAAACCAGAAGATCCTTCTTCTTGTATTTTGTTATCTAATGTATATGCTGGGGCTGGTATGTGGAAGAATGTTTCGAAAGTGAGAAAGTTAATGATGGCCATGGAAGTTAAAAAGGAACCTGGTTATAGCTGCATTGAATTGGGAAAGGAAAGCTGTGTGTTTTATGCTGGAGAGACTTTTCATCCAATGAAAGATGAGATCGTAGGATTAATGAGTAAGTTAGATGCAGAGATGAGAAAGAGGGGTTATGTTCCTGATACTAGCTCAGTTTTCCACGACATGGATCAACAAGAGAAAGAAAGACAACTTTTCTGGCATAGTGAGAGGTTGGCTGTGGCTTATGGGCTTCTTAAGGCTGTTCCAGGGACTATTATACGTATAGTGAAAAATCTTCGTGTTTGTGGAGATTGTCATACTGTTCTGAAGCTCATCAGCACTATAGCAAATAGAGAAATTTATGTCCGAGATATCAAAAGATATCACCATTTTAAGAATGGAAATTGTTCGTGCAATGACTTCTGGTGA 1845 0.4482 MSFSSSVHALQSQLCSTARRSPLLAKKLHAKIIKAGINRHEPFPKTLLDAYGKCGLIQDALQVFDTLPRPDVVAWASLLTACNLSNLPHRSLSISRSILNTGLFPDHFVFSSIVKACANLGALHVKQGKQVHARFFLSPFSHDDVVKSSLVDMYAKFGLSHYGRAVFDSISSPNSISWTAMISGYARSGKKFEAFRLFRQTPYRNLFAWTALISGMVQSGNAVDAFNLFVEMRREGISVTDPLVLSSVVGACANLAVLELGKQMHGLVITLGYESCLFISNTLVDMYAKCSDLVAAKYIFSEMCRKDVVSWTSIIVGTAQHGQAEEALALYDDMVLAGIKPNEVTFVGLICACSHAGLVSKGRAVFRSMVEDHGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDNSTWVALLSACKQHGNTQMAVRIADHLLNLKPEDPSSCILLSNVYAGAGMWKNVSKVRKLMMAMEVKKEPGYSCIELGKESCVFYAGETFHPMKDEIVGLMSKLDAEMRKRGYVPDTSSVFHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTIIRIVKNLRVCGDCHTVLKLISTIANREIYVRDIKRYHHFKNGNCSCNDFW* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2342 614 Pfam PPR repeat family 306 354 IPR002885 -
Apr10g2342 614 Pfam E motif 424 486 IPR046848 -
Apr10g2342 614 Pfam DYW family of nucleic acid deaminases 522 614 IPR032867 GO:0008270
Apr10g2342 614 Gene3D Tetratricopeptide repeat domain 4 131 IPR011990 GO:0005515
Apr10g2342 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 204 IPR002885 -
Apr10g2342 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Apr10g2342 614 Gene3D Tetratricopeptide repeat domain 371 441 IPR011990 GO:0005515
Apr10g2342 614 Gene3D Tetratricopeptide repeat domain 261 370 IPR011990 GO:0005515
Apr10g2342 614 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 10 602 - -
Apr10g2342 614 SUPERFAMILY TPR-like 280 465 IPR011990 GO:0005515
Apr10g2342 614 TIGRFAM PPR: pentatricopeptide repeat domain 208 240 IPR002885 -
Apr10g2342 614 TIGRFAM PPR: pentatricopeptide repeat domain 281 309 IPR002885 -
Apr10g2342 614 TIGRFAM PPR: pentatricopeptide repeat domain 309 343 IPR002885 -
Apr10g2342 614 TIGRFAM PPR: pentatricopeptide repeat domain 344 378 IPR002885 -
Apr10g2342 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 377 IPR002885 -
Apr10g2342 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Apr10g2342 614 Gene3D Tetratricopeptide repeat domain 132 260 IPR011990 GO:0005515
Apr10g2342 614 PANTHER OS11G0661000 PROTEIN 10 602 - -
Apr10g2342 614 Pfam PPR repeat 176 200 IPR002885 -
Apr10g2342 614 Pfam PPR repeat 208 237 IPR002885 -
Apr10g2342 614 Pfam PPR repeat 382 405 IPR002885 -
Apr10g2342 614 Pfam PPR repeat 46 65 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2342 Apr-Chr10 35306357 35309725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2342 3 614 Glycoside Hydrolase AT3G49170 36.640 3.68e-132 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2342 - - gmx:100782048 1085.86