LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr10g2337	ATGTGTCCAATGGCTTCTACTAGCAATAAATTTTTTGTGCTTATAGTGGTGGTTAGCACCATGGTGGCTGCATGTGGTGCTAGCTTCTACCAAGATTTTGATCTAACATGGGGTGATAACCGTGCTAAGATATTCAATGGAGGTCAACTTCTATCTCTTTCTCTTGACAAAGTTTCTGGCTCTGGCTTCCAATCCAAGAAAGAGTACCTCTTTGGGAGGATTGATATGCAGCTCAAGCTTGTTGCTGGCAACTCTGCTGGCACTGTCACTGCTTACTACTTGTCATCTCAAGGGCCAACTCATGACGAGATTGATTTCGAGTTCTTAGGGAATGTGAGCGGTGATCCCTACATTCTCCACACAAATGTCTTTACCCAAGGCCAAGGGAACCGAGAACAACAGTTCTACCTATGGTTTGACCCCACCAGAAACTTCCACACTTACTCTATCATTTGGAAGCCCAATCACATTATATTCTTGGTTGATAACATTCCCATAAGGGTGTTCAAGAATGCTGAGTCTATTGGCGTTCCTTTCCCAAAGAACCAGCCCATGAGAATCTACTCAAGCTTGTGGAATGCTGATGACTGGGCCACCAGAGGTGGTTTGGTCAAAACTGATTGGTCCAAAGCACCCTTTACAGCTTACTACCGAAACTTCAAAGCCACTCAGTTTTCCGGGTCTTCCAATTCCTTCTCTGATGCTGCATGGCGGAGCAACGAGCTTGATGCTTATGGCAGAAGAAGATTGAGATGGGTTCAGAAGTATTTCATGATCTATAACTACTGCAACGATCTTAAGCGATTCCCACAAGGCCTTCCTGCTGAGTGTAGCCGCTGA	840	0.4512	MCPMASTSNKFFVLIVVVSTMVAACGASFYQDFDLTWGDNRAKIFNGGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGQGNREQQFYLWFDPTRNFHTYSIIWKPNHIIFLVDNIPIRVFKNAESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATQFSGSSNSFSDAAWRSNELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGLPAECSR*	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr10g2337	279	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	235	277	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Apr10g2337	279	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	103	113	IPR008263	GO:0004553\|GO:0005975
	Apr10g2337	279	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	11	279	IPR044791	GO:0004553
	Apr10g2337	279	PRINTS	Glycosyl hydrolase family 16 signature	61	79	IPR008264	GO:0004553\|GO:0005975
	Apr10g2337	279	PRINTS	Glycosyl hydrolase family 16 signature	119	132	IPR008264	GO:0004553\|GO:0005975
	Apr10g2337	279	PRINTS	Glycosyl hydrolase family 16 signature	137	154	IPR008264	GO:0004553\|GO:0005975
	Apr10g2337	279	CDD	GH16_XET	26	277	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Apr10g2337	279	PIRSF	EndGlu_transf	1	279	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Apr10g2337	279	Pfam	Glycosyl hydrolases family 16	30	210	IPR000757	GO:0004553\|GO:0005975
	Apr10g2337	279	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	23	217	IPR000757	GO:0004553\|GO:0005975
	Apr10g2337	279	Gene3D	-	14	279	-	-
	Apr10g2337	279	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15	11	279	-	-
	Apr10g2337	279	SUPERFAMILY	Concanavalin A-like lectins/glucanases	27	278	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr10g2337	Apr-Chr10	35269526	35271212	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr10g2337	4	279	Glycoside Hydrolase	AT3G23730	72.569	8.51e-160	444

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr10g2337	K08235		-	gmx:100499905	536.184

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr10g2337	10	35269526	35271212	Apr10g2337	10	35269526	35271212	ECH