Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2336 ATGGAGAACGTACTGATGCACACTCACTTCGTGCTGGTGTTGAACTCCAATTGCAGAGAAAGTAAAAGTAGGAACAGTGTTTTCCGGAAACCCTTTGCGAAATTCCGATCCCTCACCACTCAAATTTGCTATGCCTCTTTCCACCCTTTACCGTCACTCACTCACACAGTTTCAGACTCAAAGCATAAAACTCTTCTGGTTGAGAATTACCATCTTCATGAAAGTCTCAGAACCTTACTTGCAAAGCTTGAGGAGGAAGATTCATGCCCTCTGCACATACTCACCCAAGATGGAGATTGGTCCAAAGACCATTTCTGGGCCGTTGTCAAGTTCCTTAAAAATGCTTCCAGGTTTACCCAAATTCTTCAGGTTTTTGATGTGTGGAAGAACATTGAGAAATCGAGGATTAGTGAGTTTAACTATAACAAGATCATAAGCTTGTTATGTGAAGAAGGAATGATGGAAAATGCGTTATCTGCACTGAAAGAGATGAAAATTCAAGGTCTCAAGCCTTCTTTGGACACTTACAATCCAATAATTCATGGATTATCCATAGAAGGTAAGTTCAGCGATGCCTTACATTATTTTGATGAAATGAAAGAATCTGGTTTAGAACCGGGGACTGAAACCTATGATGGTTTGATTCGGGCCTATGGTAAATTTCAAATGTACGATGAGATTGTTAAGTGTGTGAAAAATATGGAATTGGATGGATGCTCTCCTGATCATATCACTTATAATATACTTATTCAAGAGTATTCGCGTGCTGGGCTACTCCCGAGAATAGAAAAGCTTTATCAAAGAATGCTTTCAAAACGAATGCATTTGCAGTCTTCTACTTTAGTTGCAATGCTAGAAGCTTATACCACATTTGAGATGGTAGAAAAGATGGAAAAATTTTATAGAAAACTTTTGAACTCAAAAACACGTTTAAAGGATGATTTGATTAGAAAATTGGCTGAAGTTTATATCAAGAACTACATGTATTCTAGATTGGAGGACCTAGGACTAGATTTATGTTCGGCATTTGGTGAGAGCAACCTTGTATGGTGTCTCCGTCTCCTTTCTTATGCGTGTCTTTTGAGTAAAAAAGGTATGGATATAATTGTTCGAGAAATGCAACATGCCAAAGCTAATTGGAATGTTACTTTTACAAATATTATCATGCTGGCTTATGTAAAGATGAGAGATTTCAAGCATTTGAGGATTTTGCTCTCTCAATTGCCAATCTATCAGGTGAAGCCTGATATAATCACTATTGGAATCCTATTTGATGCAAATAGAATTGGTTTTGATGGTAGTGGAGCTTTGGAAACATGGAGAAGAATGGGCTATCTGTACAGAGTAGTAGAAATGAAAACAGATTCTCTGGTCCTTACTACATTTGGGAAAGGTCATTTTCTTAAAAGCTGTGAAGAAGTGTACTCTTCTCTTCACCCTGAGGATAGAGAAAAGAAAACATGGACTTATTATGATCTCATTGCTTTGTTGTCAAAACATACTGGTAGTGTCGACTGTATGAAACCAAGATAG 1533 0.3764 MENVLMHTHFVLVLNSNCRESKSRNSVFRKPFAKFRSLTTQICYASFHPLPSLTHTVSDSKHKTLLVENYHLHESLRTLLAKLEEEDSCPLHILTQDGDWSKDHFWAVVKFLKNASRFTQILQVFDVWKNIEKSRISEFNYNKIISLLCEEGMMENALSALKEMKIQGLKPSLDTYNPIIHGLSIEGKFSDALHYFDEMKESGLEPGTETYDGLIRAYGKFQMYDEIVKCVKNMELDGCSPDHITYNILIQEYSRAGLLPRIEKLYQRMLSKRMHLQSSTLVAMLEAYTTFEMVEKMEKFYRKLLNSKTRLKDDLIRKLAEVYIKNYMYSRLEDLGLDLCSAFGESNLVWCLRLLSYACLLSKKGMDIIVREMQHAKANWNVTFTNIIMLAYVKMRDFKHLRILLSQLPIYQVKPDIITIGILFDANRIGFDGSGALETWRRMGYLYRVVEMKTDSLVLTTFGKGHFLKSCEEVYSSLHPEDREKKTWTYYDLIALLSKHTGSVDCMKPR* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2336 510 Pfam PPR repeat 237 259 IPR002885 -
Apr10g2336 510 Pfam Pentatricopeptide repeat domain 161 220 IPR002885 -
Apr10g2336 510 Gene3D Tetratricopeptide repeat domain 234 310 IPR011990 GO:0005515
Apr10g2336 510 Gene3D Tetratricopeptide repeat domain 71 233 IPR011990 GO:0005515
Apr10g2336 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Apr10g2336 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Apr10g2336 510 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 11 502 - -
Apr10g2336 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Apr10g2336 510 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 11 502 - -
Apr10g2336 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Apr10g2336 510 TIGRFAM PPR: pentatricopeptide repeat domain 141 172 IPR002885 -
Apr10g2336 510 TIGRFAM PPR: pentatricopeptide repeat domain 175 207 IPR002885 -
Apr10g2336 510 TIGRFAM PPR: pentatricopeptide repeat domain 210 242 IPR002885 -
Apr10g2336 510 TIGRFAM PPR: pentatricopeptide repeat domain 244 274 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g2336 141 408 Glycosyltransferase AT1G05670 21.933 2.39e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2336 - - gmx:100808924 838.95