Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g2333 ATGTCGGAGATGGCGAGCACCGATCCCGAGGGAGTTGACGGAGTCCGCATGACGTGGAACGTGTGGCCTCGCAGCAAAGTGGAAGCCAGCAAGTGCGTGATCCCACTCGCCGCCACCCTCGCCGTGATCCGTCCTCACCCGGACATCCCACGCCTTCCCTACGCGCCTCTCCGATGCAAAACATGCTCCTCCGCACTCAACCCTTTCTCGCGCGTCGACTTCAACGCCAAGATCTGGATCTGTCCTTTCTGCTACCAACGCAACCATTTTCCCCCTCACTACAACGCCATCTCCGAAACCAATCTTCCCGGCGAACTCTACCCGCAATACACCACCGTCGAATACAATCTCCCTCTCTCCAATTCTCTTCATCCTTCGCCGGTTTTTCTCTTCCTTCTCGATACTTCTCTCATCGAGGAAGAGATCCAGTTTCTCAAATCTGCGCTTCGTCAGGCTATTGGTCTTTTGCCTGATAACGCTCTCGTTGGTTTCGTTTCCTATGGTACGCAGGTTCAGGTTCATGAATTGGGGTTCTCCGATATGTCTAAGGTTTATGTCTTCCGTGGTTCTAAGGAAATTCCCAAGGATCAGGTTTTGGACCAGCTTGGTCTTGCTACCTCTGGGAGGAGACCTCATAAGGGTGCTCCTGGTGGTGTTGGTGGTGGATTTCCCTATTCTGGCATCACGCGCTTCTTGTTGCCTGCTTCTGATTGTGAATACACCCTCAACGCGCTGTTAGATGAATTGCAAACCGATCAATGGCCAGTTCCACCTGGTCGCCGCCCTGCTCGCTGCACCGGAGTTGCCTTGAGTGTTGCTGCGGGGTTGCTGAGTGCTTGTAATCCTGGGACTGGCGCTAGGATCATTGCTTTGGTTGGGGGCCCATGCACGGAAGGACCCGGCGCGATTGTGTCAAAAGATCTATCTGACCCTGTGCGTTCTCATAAAGATCTTGATAAAGATGCAGCACCATACTTCAAGAAAGCAGTCAAATTTTATGAGGGTCTTGCAAAACAGCTGGTTAGCCAGGGTCACGTTTTAGATATTTTTGCATCAGCACTTGATCAGGTTGGAGTTGCAGAAATGAAAGTTGTGGTTGAAAGAACTGGTGGCCTTGTTGTCCTGTCTGAAAGTTTTGGCCATTCAGTCTTCAAGGACTCTTTTAAGCGTGTTTTTGAGGATGGGGAGCAATCTCTAGGTCTTTGTTTCAATGGAACCCTGGAGATAAATTGCTCAAAGGAAATCAAAATTCAGGGAATAGTTGGACCTTGCACATCATTGGAAAAGAAAGGCCCTTCTGTTGCTGATACTGTTATAGGTGAGGGAAACACTACAGCATGGAAGATGTGTGGCCTTGACAAGAGTACATGCTTGACTGTAATGTTTGATCTTTCATCAAGCGATCGTTCAAACACCCCAGGTGCTGTCAACCCACAATTGTACCTACAGTTCCGTACAAGTTACCAGGGCCCAGATGGTCAATCAGTGCTTCGGGTTACAACAGTAACTAGAAGATGGGTAGATAGTTCTGTGAGCTCTGAGGTAGAATTGATTCAAGGATTTGACCAAGAAACTGCTGCTGTGGTAATGGCTAGATATGCTTCTCTGAAAATGGAGACTGAGGAAACATTTGATGCCACGCGTTGGTTGGATCGGTTCCTCATTCGCCTTTGTTCTAAGTTTGGTGACTACCGCAAGGATGATCCATCATCTTTTACATTAAACCCATCATTTTCACTTTTCCCTCAGTTTATGTTCAATCTGAGACGCTCACAGTTTGTACAGGTTTTTAACAACAGTCCAGACGAGACTGCATACTTCCGCATGTTGTTAAACAGGGAAAATATTAGTAATGCTGCTGTCATGATTCAGCCATCACTGATATCTTATTCATTTAATTCACTTCCTGCACCAGCATTGTTAGATGTGGCTTCCATTGCTGCAGACCGGATTTTGTTGTTAGATGCATATTTTAGTGTGGTTATTTTTCACGGGATGACAATAGCTCAGTGGCGCAACTTGGGATACCAGAACCAACCTGAACACCAGGCATTTGCACAACTATTACGAGCACCACATGACGATGCCCAAATGATAATTAGAGAACGATTCCCTGTTCCTAGATTGGTAGTGTGTGACCAACATGGTTCCCAGGCTAGATTTTTATTAGCAAAACTGAATCCCTCAGCAACATATAATAATGCGCATGAGATGGCTGCTGGTTCAGATGTAATCTTTACTGATGATGTGAGCCTTCAAGTTTTCTTTGAGCATCTGCAAAGGCTGGCTGTCCAATCTTGA 2301 0.4707 MSEMASTDPEGVDGVRMTWNVWPRSKVEASKCVIPLAATLAVIRPHPDIPRLPYAPLRCKTCSSALNPFSRVDFNAKIWICPFCYQRNHFPPHYNAISETNLPGELYPQYTTVEYNLPLSNSLHPSPVFLFLLDTSLIEEEIQFLKSALRQAIGLLPDNALVGFVSYGTQVQVHELGFSDMSKVYVFRGSKEIPKDQVLDQLGLATSGRRPHKGAPGGVGGGFPYSGITRFLLPASDCEYTLNALLDELQTDQWPVPPGRRPARCTGVALSVAAGLLSACNPGTGARIIALVGGPCTEGPGAIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDIFASALDQVGVAEMKVVVERTGGLVVLSESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGIVGPCTSLEKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSDRSNTPGAVNPQLYLQFRTSYQGPDGQSVLRVTTVTRRWVDSSVSSEVELIQGFDQETAAVVMARYASLKMETEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLISYSFNSLPAPALLDVASIAADRILLLDAYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPHDDAQMIIRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g2333 766 Gene3D Sec23/Sec24 helical domain 519 763 - -
Apr10g2333 766 SUPERFAMILY beta-sandwich domain of Sec23/24 8 521 - -
Apr10g2333 766 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Apr10g2333 766 Pfam Sec23/Sec24 beta-sandwich domain 403 507 IPR012990 -
Apr10g2333 766 SUPERFAMILY Helical domain of Sec23/24 522 624 IPR036175 GO:0006886|GO:0006888|GO:0030127
Apr10g2333 766 Gene3D - 10 504 - -
Apr10g2333 766 Gene3D von Willebrand factor, type A domain 126 401 IPR036465 -
Apr10g2333 766 SUPERFAMILY Zn-finger domain of Sec23/24 47 118 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Apr10g2333 766 Pfam Gelsolin repeat 634 722 IPR007123 -
Apr10g2333 766 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 2 765 IPR037364 -
Apr10g2333 766 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 625 765 IPR036180 -
Apr10g2333 766 SUPERFAMILY vWA-like 127 393 IPR036465 -
Apr10g2333 766 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 2 765 - -
Apr10g2333 766 Pfam Sec23/Sec24 trunk domain 126 392 IPR006896 GO:0006886|GO:0006888|GO:0030127
Apr10g2333 766 Gene3D - 53 112 - -
Apr10g2333 766 CDD Sec23_C 614 734 IPR037550 GO:0030127|GO:0090114
Apr10g2333 766 Pfam Sec23/Sec24 helical domain 522 618 IPR006900 GO:0006886|GO:0006888|GO:0030127
Apr10g2333 766 Gene3D Severin 624 728 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g2333 Apr-Chr10 35244876 35251186 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g2333 K14006 - gmx:100813940 1426.77